deSolve
Functions that solve initial value problems of a system of first-order ordinary differential equations ('ODE'), of partial differential equations ('PDE'), of differential algebraic equations ('DAE'), and of delay differential equations. The functions provide an interface to the FORTRAN functions 'lsoda', 'lsodar', 'lsode', 'lsodes' of the 'ODEPACK' collection, to the FORTRAN functions 'dvode', 'zvode' and 'daspk' and a C-implementation of solvers of the 'Runge-Kutta' family with fixed or variable time steps. The package contains routines designed for solving 'ODEs' resulting from 1-D, 2-D and 3-D partial differential equations ('PDE') that have been converted to 'ODEs' by numerical differencing.
- A theoretical framework of the scaled Gaussian stochastic process in prediction and calibration
- acebayes
- adaptMCMC
- cmna
- rSymPy
- GillespieSSA
- episode
- neuRosim
- MCSim
- sensitivity
- alphashape3d
- elliptic
- EpiDynamics
- stgenreg
- deGradInfer
- CaliCo
- simode
- hgm
- diversitree
- multisensi
- SALib
- ASDE
- SAFE Toolbox
- Titan2D
- eBACOLI
- epimdr
- InfoMating
- spreadr
- rTensor
- EpiContactTrace
- NIMROD
- mapfit
- sensobol
- KGode
- covid19.analytics
- DDD
- dmodloc.lib
- opt_cmp
- DAISIE
- DIMORA
- MGDrivE2
- landsepi
- hisse
- deFit
- deBInfer
- streambugs
- deBif
- asteRisk
- biogrowth
- magi
- idopNetwork
- exDE
- soilassessment
- ecolMod
- ATNr
- fitode
- growthrates
- TrenchR
- embryogrowth
- pCODE
- idmodelr
- EvolutionaryGames
- A one-step method for modelling longitudinal data with differential equations
- torch
- epimdr2
- Armstrong-McGehee mechanism revisited: competitive exclusion and coexistence of nonlinear consumers
- Modeling COVID-19 in Cape Verde Islands -- an application of SIR model
- Population design for synthetic gene circuits
- Mathematical modelling of between hive transmission of nosemosis by drifting
- A within-host mathematical model of H9N2 avian influenza infection and type-I interferon response pathways in chickens
- Bayesian prediction for physical models with application to the optimization of the synthesis of pharmaceutical products using chemical kinetics
- Model selection via marginal likelihood estimation by combining thermodynamic integration and gradient matching
- Pairing food and drink: a physiological model of blood ethanol levels for a variety of drinking behaviors
- SEIRS epidemics with disease fatalities in growing populations
- Mathematical and numerical models of the central regulatory circuit of the morphogenesis system of Drosophila
- Moving Boundary PDE Analysis
- Emulating dynamic non-linear simulators using Gaussian processes
- Solving ODEs, DAEs, DDEs and PDEs in R
- Adaptive Semiparametric Bayesian Differential Equations Via Sequential Monte Carlo
- Incremental Mixture Importance Sampling With Shotgun Optimization
- A mathematical model for the macrophage response to respiratory viral infection in normal and asthmatic conditions
- Cancer-induced immunosuppression can enable effectiveness of immunotherapy through bistability generation: a mathematical and computational examination
- Short communication: Sensitivity analysis of an integrated climate-economic model
- Evolutionary stability of minimal mutation rates in an evo-epidemiological model
- On the optimal schedule of adiabatic quantum computing
- Numerical analysis using R. Solutions to ODEs and PDEs
- On the Lorenz '96 model and some generalizations
- Optimal control of the COVID-19 pandemic with non-pharmaceutical interventions
- The impact of behavioral interventions on co-infection dynamics: an exploration of the effects of home isolation
- Mathematical model of radiation effects on thrombopoiesis in rhesus macaques and humans
- Density dependence on multiple spatial scales maintains spatial variation in both abundance and traits
- Algebraic analysis of rotation data
- A non-parametric Hawkes model of the spread of Ebola in west Africa
- A mathematical model for the interplay of Nosema infection and forager losses in honey bee colonies
- JABBA
- Dynamic tail inference with log-Laplace volatility
- Option pricing in a one-dimensional affine term structure model via spectral representations
- Herd dynamics age and sex structured model considering management practices and animal movements among districts
- The effects of stringent and mild interventions for coronavirus pandemic
- smcDE
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