deSolve
Functions that solve initial value problems of a system of first-order ordinary differential equations ('ODE'), of partial differential equations ('PDE'), of differential algebraic equations ('DAE'), and of delay differential equations. The functions provide an interface to the FORTRAN functions 'lsoda', 'lsodar', 'lsode', 'lsodes' of the 'ODEPACK' collection, to the FORTRAN functions 'dvode', 'zvode' and 'daspk' and a C-implementation of solvers of the 'Runge-Kutta' family with fixed or variable time steps. The package contains routines designed for solving 'ODEs' resulting from 1-D, 2-D and 3-D partial differential equations ('PDE') that have been converted to 'ODEs' by numerical differencing.
- odeGUTS
- DSAIRM
- PFIM
- CRABS
- lemna
- stagePop
- odin
- RLumModel
- spdynmod
- microPop
- SoilR
- ACDC
- briskaR
- gauseR
- microsamplingDesign
- bvpSolve
- isobxr
- ubiquity
- DSAIDE
- epcc
- epifitter
- ecosim
- ecostatscale
- BACOL
- tdsa
- doremi
- StrathE2E2
- readsdr
- torch
- JABBA
- shinySIR
- epimdr2
- smcDE
- IMIS-ShOpt
- DAMOCLES
- seeds
- rties
- LSODA
- DivE
- capm
- Flexible nonhomogeneous Markov models for panel observed data
- nhm
- bioinactivation
- CausalKinetiX
- ODEsensitivity
- ZeBook
- PBD
- TDCor
- soilfoodwebs
- snvecR
- wxMaxima
- Mathcad
- nlstools
- simecol
- PARTITION
- SEIRS epidemics with disease fatalities in growing populations
- Finding all multiple stable fixpoints of \(n\)-species Lotka-Volterra competition models
- Bayesian prediction for physical models with application to the optimization of the synthesis of pharmaceutical products using chemical kinetics
- Trade-offs in resource allocation in the intracellular life-cycle of hepatitis C virus
- Unifying relationships between complexity and stability in mutualistic ecological communities
- Epigrass
- deTestSet
- TIMP
- Emulating dynamic non-linear simulators using Gaussian processes
- CRAN Optimization
- Rcplex
- RootSolve
- BvpSolve
- ODEPACK
- BiM
- Second compartment widens plasmid invasion conditions: two-compartment pair-formation model of conjugation in the gut
- Optimal spatial monitoring of populations described by reaction-diffusion models
- On the Lorenz '96 model and some generalizations
- Pairing food and drink: a physiological model of blood ethanol levels for a variety of drinking behaviors
- Population design for synthetic gene circuits
- Mathematical modelling of between hive transmission of nosemosis by drifting
- Dynamic tail inference with log-Laplace volatility
- Optimal control of the COVID-19 pandemic with non-pharmaceutical interventions
- twpbvpl
- Two routes of transmission for \textit{Nosema} infections in a honeybee population model with polyethism and time-periodic parameters can lead to drastically different qualitative model behavior
- Modeling COVID-19 in Cape Verde Islands -- an application of SIR model
- Herd dynamics age and sex structured model considering management practices and animal movements among districts
- GSM
- SparseM
- GUTS
- grid
- pomp
- asbio
- Modelling competition between hybridising subspecies
- appell
- diffEq
- Density dependence on multiple spatial scales maintains spatial variation in both abundance and traits
- Cancer-induced immunosuppression can enable effectiveness of immunotherapy through bistability generation: a mathematical and computational examination
- Model selection via marginal likelihood estimation by combining thermodynamic integration and gradient matching
- ProbForecastGOP
- Rmpfr
- gaoptim
- grofit
- linprog
- minpack.lm
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