Gaussian process approximations for fast inference from infectious disease data
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Cites work
- \(\mathrm{SMC}^2\): an efficient algorithm for sequential analysis of state space models
- A constrained Langevin approximation for chemical reaction networks
- Approximate Integration of Stochastic Differential Equations
- Approximation of epidemic models by diffusion processes and their statistical inference
- Assessing the variability of stochastic epidemics
- For principled model fitting in mathematical biology
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- Inference for reaction networks using the linear noise approximation
- Limit theorems for sequences of jump Markov processes approximating ordinary differential processes
- On parameter estimation in population models
- Particle Markov Chain Monte Carlo Methods
- Simulation-based Bayesian inference for epidemic models
- Solutions of ordinary differential equations as limits of pure jump markov processes
- Stochastic amplification in an epidemic model with seasonal forcing
- Stochastic differential equations as a tool to regularize the parameter estimation problem for continuous time dynamical systems given discrete time measurements
- Stochastic epidemic models and their statistical analysis
- Two singular diffusion problems
Cited in
(13)- Phenomenological forecasting of disease incidence using heteroskedastic Gaussian processes: a dengue case study
- Identifying main effects and interactions among exposures using Gaussian processes
- Inference in Gaussian state-space models with mixed effects for multiple epidemic dynamics
- A martingale formulation for stochastic compartmental susceptible-infected-recovered (SIR) models to analyze finite size effects in COVID-19 case studies
- Inference for partially observed epidemic dynamics guided by Kalman filtering techniques
- Fitting stochastic epidemic models to gene genealogies using linear noise approximation
- GAUSSIAN PROCESS MODELS FOR MORTALITY RATES AND IMPROVEMENT FACTORS
- A scalable gaussian process analysis algorithm for biomass monitoring
- Inference for reaction networks using the linear noise approximation
- Fast inference for network models of infectious disease spread
- Gaussian process emulators for spatial individual-level models of infectious disease
- Accelerating Bayesian inference for stochastic epidemic models using incidence data
- Gaussian process modelling of infectious diseases using the Greta software package and GPUs
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