iBATCGH: integrative Bayesian analysis of transcriptomic and CGH data

DOI10.1007/978-3-319-27099-9_6MaRDI QIDQ2956744zbMATH OpenOpenAlexFDO

Authors Alberto Cassese, Michele Guindani, Marina Vannucci

Publication date 19 January 2017

Published in Statistical Analysis for High-Dimensional Data (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/978-3-319-27099-9_6

zbMATH Keywords

genomic dataintegrative Bayesian analysisMarkov modelMonte Carlo techniquesovarian cancertranscriptomic

Mathematics Subject Classification ID

Discrete-time Markov processes on general state spaces (60J05) Software, source code, etc. for problems pertaining to statistics (62-04) Bayesian problems; characterization of Bayes procedures (62C10) Bayesian inference (62F15) Applications of statistics to biology and medical sciences; meta analysis (62P10) Monte Carlo methods (65C05)

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Cited in

(4)

• A hierarchical Bayesian model for inference of copy number variants and their association to gene expression
• PICS: Probabilistic Inference for ChIP-seq
• MDI-GPU: accelerating integrative modelling for genomic-scale data using GP-GPU computing
• Bayesian Integrative Region Segmentation in Spatially Resolved Transcriptomic Studies

Describes a project that uses

Uses Software

• Rcpp
• DAVID
• PennCNV
• R
• iBATCGH
• CNVassoc

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