Statistical and algorithmic methods for fluctuation analysis with SALVADOR as an implementation

DOI10.1016/S0025-5564(02)00087-1MaRDI QIDQ1603296zbMATH OpenWikidataFDO

Authors Qi Zheng

Publication date 11 July 2002

Published in Mathematical Biosciences (Search for Journal in Brave)

zbMATH Keywords

computer packageFisher's informationdirected mutation controversyestimation of mutation ratesfluctuation experiments

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Genetics and epigenetics (92D10)

Recommendations

• New algorithms for Luria-Delbrück fluctuation analysis
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• Fluctuation analysis on mutation models with birth-date dependence
• A note on plating efficiency in fluctuation experiments

Cites work

• scientific article; zbMATH DE number 436060 (Why is no real title available?)
• scientific article; zbMATH DE number 3482629 (Why is no real title available?)
• scientific article; zbMATH DE number 1292563 (Why is no real title available?)
• scientific article; zbMATH DE number 3206712 (Why is no real title available?)
• A population birth-and-mutation process, I: explicit distributions for the number of mutants in an old culture of bacteria
• Analysis of the Luria–Delbrück distribution using discrete convolution powers
• Infinitely divisible sequences
• Mathematical models for estimating mutation rates in cell populations
• Progress of a half century in the study of the Luria-Delbrück distribution
• Remarks on the Luria–Delbrück distribution
• Singularity Analysis of Generating Functions

Cited in

(11)

• Accumulation of neutral mutations in growing cell colonies with competition
• Estimating mutation rates in a Markov branching process using approximate Bayesian computation
• Fast maximum likelihood estimation of mutation rates using a birth-death process
• Statistics for the Luria-Delbrück distribution
• A generalized Luria-Delbrück model
• New approaches to mutation rate fold change in Luria-Delbrück fluctuation experiments
• On Haldane's formulation of Luria and Delbrück's mutation model
• New algorithms for Luria-Delbrück fluctuation analysis
• Toward a unique definition of the mutation rate
• Estimation of rates of non-neutral mutations when bacteria are exposed to subinhibitory levels of antibiotics
• Cellular replication limits in the Luria-Delbrück mutation model

Describes a project that uses

Uses Software

• Mathematica

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