Estimating mutation rates in a Markov branching process using approximate Bayesian computation

DOI10.1016/J.JTBI.2023.111467MaRDI QIDQ6174199zbMATH OpenOpenAlexFDO

Authors Ruijin Lu, Hongxiao Zhu, Xiaowei Wu

Publication date 14 July 2023

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jtbi.2023.111467

zbMATH Keywords

approximate Bayesian computationfluctuation analysisMarkov branching processGaussian process surrogate

Mathematics Subject Classification ID

Problems related to evolution (92D15) Applications of branching processes (60J85)

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Cites work

• scientific article; zbMATH DE number 3569467 (Why is no real title available?)
• scientific article; zbMATH DE number 6424101 (Why is no real title available?)
• A Comparison of Three Methods for Selecting Values of Input Variables in the Analysis of Output from a Computer Code
• Bayesianly justifiable and relevant frequency calculations for the applied statistician
• Birth-death processes with piecewise constant rates
• Constructing summary statistics for approximate Bayesian computation: semi-automatic approximate Bayesian computation. With discussion and authors' reply
• Fast maximum likelihood estimation of mutation rates using a birth-death process
• Likelihood-free estimation of model evidence
• On Bartlett's formulation of the Luria-Delbrück mutation model
• On age-dependent binary branching processes
• On optimal selection of summary statistics for approximate Bayesian computation
• Practical Heteroscedastic Gaussian Process Modeling for Large Simulation Experiments
• Statistical and algorithmic methods for fluctuation analysis with SALVADOR as an implementation

Cited in

(5)

• Estimating change rates of genetic markers using serial samples: applications to the transposon IS6110 in Mycobacterium tuberculosis
• Improved inference of mutation rates. I: An integral representation for the Luria-Delbrück distribution
• On an unbiased and consistent estimator for mutation rates
• AABC: approximate approximate Bayesian computation for inference in population-genetic models
• Estimation of rates of non-neutral mutations when bacteria are exposed to subinhibitory levels of antibiotics

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