Determining species tree topologies from clade probabilities under the coalescent

DOI10.1016/j.jtbi.2011.08.006zbMath1397.92478arXiv1103.0375OpenAlexW2964076513WikidataQ39714325 ScholiaQ39714325MaRDI QIDQ1786519

John A. Rhodes, James H. Degnan, Elizabeth S. Allman

Publication date: 24 September 2018

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1103.0375

zbMATH Keywords

coalescentidentifiabilityconsensusphylogeneticsstatistical consistency

Mathematics Subject Classification ID

Trees (05C05) Problems related to evolution (92D15) Taxonomy, cladistics, statistics in mathematical biology (92B10)

Related Items

Identifiability of the unrooted species tree topology under the coalescent model with time-reversible substitution processes, site-specific rate variation, and invariable sites ⋮ Split probabilities and species tree inference under the multispecies coalescent model ⋮ Identifying a species tree subject to random lateral gene transfer ⋮ Identifiability of phylogenetic parameters from \(k\)-mer data under the coalescent ⋮ Multiple merger gene genealogies in two species: monophyly, paraphyly, and polyphyly for two examples of lambda coalescents

Uses Software

• SINGULAR
• BUCKy

Cites Work

• Identifying the rooted species tree from the distribution of unrooted gene trees under the coalescent
• The probability of topological concordance of gene trees and species trees.
• Coalescents with multiple collisions
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