Model-based approach to the joint analysis of single-cell data on chromatin accessibility and gene expression

DOI10.1214/19-STS714OpenAlexW3010560083MaRDI QIDQ2218013FDOQ2218013

Authors: Zhixiang Lin, M. Zamanighomi, Timothy Daley, Shining Ma, Wing H. Wong 

Publication date: 12 January 2021

Published in: Statistical Science (Search for Journal in Brave)

Full work available at URL: https://projecteuclid.org/euclid.ss/1583226022

zbMATH Keywords

MCMCBayesian modelingcoupled clusteringsingle-cell genomics

Mathematics Subject Classification ID

Statistics (62-XX)

Cites Work

• Title not available (Why is that?)
• Covariance structure of the Gibbs sampler with applications to the comparisons of estimators and augmentation schemes
• The Collapsed Gibbs Sampler in Bayesian Computations with Applications to a Gene Regulation Problem
• Title not available (Why is that?)
• Dealing With Label Switching in Mixture Models
• Multivariate Beta Distributions and Independence Properties of the Wishart Distribution
• A unified statistical framework for single cell and bulk RNA sequencing data
• Semisoft clustering of single-cell data

Cited In (2)

• Deconvolution of Ensemble Chromatin Interaction Data Reveals the Latent Mixing Structures in Cell Subpopulations
• Estimating heterogeneous gene regulatory networks from zero-inflated single-cell expression data

Uses Software

• mixtools
• Label.switching
• SC3
• CIDR
• ZIFA
• SNN-Cliq
• DESeq2
• DIMM-SC

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