Model-based approach to the joint analysis of single-cell data on chromatin accessibility and gene expression

DOI10.1214/19-STS714MaRDI QIDQ2218013zbMATH OpenOpenAlexFDO

Authors Zhixiang Lin, M. Zamanighomi, Timothy Daley, Shining Ma, Wing H. Wong

Publication date 12 January 2021

Published in Statistical Science (Search for Journal in Brave)

Full work available at URL https://projecteuclid.org/euclid.ss/1583226022

zbMATH Keywords

MCMCBayesian modelingcoupled clusteringsingle-cell genomics

Mathematics Subject Classification ID

Statistics (62-XX)

Cites work

• scientific article; zbMATH DE number 597901 (Why is no real title available?)
• scientific article; zbMATH DE number 1085980 (Why is no real title available?)
• A unified statistical framework for single cell and bulk RNA sequencing data
• Covariance structure of the Gibbs sampler with applications to the comparisons of estimators and augmentation schemes
• Dealing With Label Switching in Mixture Models
• Multivariate Beta Distributions and Independence Properties of the Wishart Distribution
• Semisoft clustering of single-cell data
• The Collapsed Gibbs Sampler in Bayesian Computations with Applications to a Gene Regulation Problem

Cited in

(2)

• Deconvolution of Ensemble Chromatin Interaction Data Reveals the Latent Mixing Structures in Cell Subpopulations
• Estimating heterogeneous gene regulatory networks from zero-inflated single-cell expression data

Describes a project that uses

Uses Software

• DIMM-SC
• DESeq2
• SNN-Cliq
• ZIFA
• CIDR
• SC3
• Label.switching
• mixtools

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