Comparison of genomic data via statistical distribution

DOI10.1016/J.JTBI.2016.07.032MaRDI QIDQ309233zbMATHOpenAlexWikidataFDO

Authors Ivo D. Dinov, Saeid Amiri

Publication date 7 September 2016

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL http://europepmc.org/articles/pmc5361063

zbMATH Keywords

clusteringdistance\(K\)-tuplealignment-free

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) General biostatistics (92B15) Genetics and epigenetics (92D10)

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Cites work

• Alignment free comparison: similarity distribution between the DNA primary sequences based on the shortest absent word
• Computational Genome Analysis
• New method for global alignment of 2 DNA sequences by the tree data structure
• Some remarks on protein attribute prediction and pseudo amino acid composition
• Statement forNaval Research Logistics
• The resampling of entropies with the application of biodiversity

Cited in

(13)

• Comparative genomics via wavelet analysis for closely related bacteria
• Using simple statistics to compare genetic sequences
• Distance measures for biological sequences: some recent approaches
• Numerical characteristics of word frequencies and their application to dissimilarity measure for sequence comparison
• Comparison methods for branching and axillary flowering sequences
• Parametric Modelling Of Genomic Sequences Distance
• Genome analysis with the conditional multinomial distribution profile
• Non-parametric application on nucleotide substitution in DNA sequences
• Comparative study of some statistical techniques for gene identification applied to three species
• A method for calculating the number of overlapped gene pairs based on Hadoop
• Comparisons of classification methods for viral genomes and protein families using alignment-free vectorization
• Sequence comparison via polar coordinates representation and curve tree
• Compositional spectrum - revealing patterns for genomic sequence characterization and comparison

Describes a project that uses

Uses Software

• iNuc-PseKNC
• repRNA
• PseKNC
• iRSpot-PseDNC
• iSS-PseDNC

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