Local error estimates for adaptive simulation of the reaction-diffusion master equation via operator splitting
From MaRDI portal
Publication:398042
DOI10.1016/j.jcp.2014.02.004zbMath1296.65121arXiv1305.3639OpenAlexW2126085017WikidataQ36558224 ScholiaQ36558224MaRDI QIDQ398042
Andreas Hellander, Michael J. Lawson, Brian Drawert, Linda R. Petzold
Publication date: 12 August 2014
Published in: Journal of Computational Physics (Search for Journal in Brave)
Full work available at URL: https://arxiv.org/abs/1305.3639
error estimatesadaptivityoperator splittinglocal errorhybrid methodsreaction-diffusion master equation
Reaction-diffusion equations (35K57) Finite difference methods for initial value and initial-boundary value problems involving PDEs (65M06) Error bounds for initial value and initial-boundary value problems involving PDEs (65M15)
Related Items
Strong Convergence for Split-Step Methods in Stochastic Jump Kinetics ⋮ Structure-preserving discretization of the chemical master equation ⋮ Information Metrics For Long-Time Errors in Splitting Schemes For Stochastic Dynamics and Parallel Kinetic Monte Carlo ⋮ Dynamical behavior of reaction-diffusion neural networks and their synchronization arising in modeling epileptic seizure: a numerical simulation study ⋮ A hybrid smoothed dissipative particle dynamics (SDPD) spatial stochastic simulation algorithm (sSSA) for advection-diffusion-reaction problems ⋮ The linear noise approximation for spatially dependent biochemical networks ⋮ A time-splitting local meshfree approach for time-fractional anisotropic diffusion equation: application in image denoising
Uses Software
Cites Work
- The role of dimerisation and nuclear transport in the Hes1 gene regulatory network
- Efficient simulation of discrete stochastic reaction systems with a splitting method
- Solving chemical master equations by adaptive wavelet compression
- Error bounds for exponential operator splittings
- An adaptive algorithm for simulation of stochastic reaction-diffusion processes
- On the Product of Semi-Groups of Operators
- Multiscale Modeling of Chemical Kinetics via the Master Equation
- Simulation of Stochastic Reaction-Diffusion Processes on Unstructured Meshes
- On the local and global errors of splitting approximations of reaction–diffusion equations with high spatial gradients