A minimal model of DNA dynamics in interaction with RNA-polymerase
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Publication:652403
DOI10.1016/J.PHYSD.2011.08.005zbMATH Open1227.92021OpenAlexW1971602727MaRDI QIDQ652403FDOQ652403
Authors: Gianne Derks, Giuseppe Gaeta 
Publication date: 14 December 2011
Published in: Physica D (Search for Journal in Brave)
Full work available at URL: http://epubs.surrey.ac.uk/105828/2/DNA_RNAP.pdf
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Cites Work
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- Nonlinear dynamics and statistical physics of DNA
- Numerical analysis of solitons profiles in a composite model for DNA torsion dynamics
- Twist solitons in complex macromolecules: from DNA to polyethylene
- The double-sine-Gordon equation: Wobbling solitons?
- Nonlinear DNA dynamics: Hierarchy of the models
- Propagation of twist solitons in fully inhomogeneous DNA chains
- Systematic perturbation theory for sine - Gordon solitons without use of inverse scattering methods
- Pinned fluxons in a Josephson junction with a finite-length inhomogeneity
- Soliton propagation in homogeneous and inhomogeneous models for DNA torsion dynamics
Cited In (16)
- Parametric resonance in a mesoscopic discrete DNA model
- Existence of stationary fronts in a system of two coupled wave equations with spatial inhomogeneity
- Unstable kink and anti-kink profile for the sine-Gordon equation on a \({\mathcal{Y}} \)-junction graph
- A new Evans function for quasi-periodic solutions of the linearised sine-Gordon equation
- The insights into richness of nonlinear Schrödinger equation
- DNA-RNA transcription as an impact of viscosity
- A formal language model of DNA polymerase enzymatic activity
- Parametric resonance in DNA
- Revisiting Salerno's sine-Gordon model of DNA: active regions and robustness
- Torsional Travelling Waves in DNA
- Instability theory of kink and anti-kink profiles for the sine-Gordon equation on Josephson tricrystal boundaries
- RNA POLYMERASE ON DNA AS A FERMI SYSTEM: INTERNAL ENERGY, ENTROPY, HEAT CAPACITY, AND NEGATIVE TEMPERATURE
- Long-range interactions between adjacent and distant bases in a DNA and their impact on the ribonucleic acid polymerase-DNA dynamics
- Stability of fronts in inhomogeneous wave equations
- Dynamic of DNA's possible impact on its damage
- Reduction and stability analysis of a transcription-translation model of RNA polymerase
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