PMA

swMATH19126CRANPMAMaRDI QIDQ30956FDOQ30956

Penalized Multivariate Analysis

Balasubramanian Narasimhan, Rob Tibshirani, Sam Gross, Daniela M. Witten

Last update: 6 February 2024

Copyright license: GNU General Public License, version 3.0, GNU General Public License, version 2.0

Software version identifier: 1.2.1, 1.0.1, 1.0.2, 1.0.4, 1.0.5, 1.0.6, 1.0.7.1, 1.0.7, 1.0.8, 1.0.9, 1.0.10, 1.0.11, 1.0, 1.1, 1.2-2, 1.2, 1.2-3

Official website: https://cran.r-project.org/web/packages/PMA/index.html

Source code repository: https://github.com/cran/PMA

Description

Performs Penalized Multivariate Analysis: a penalized matrix decomposition, sparse principal components analysis, and sparse canonical correlation analysis, described in Witten, Tibshirani and Hastie (2009) <doi:10.1093/biostatistics/kxp008> and Witten and Tibshirani (2009) Extensions of sparse canonical correlation analysis, with applications to genomic data <doi:10.2202/1544-6115.1470>.

Cites work

• A penalized matrix decomposition, with applications to sparse principal components and canonical correlation analysis
• Extensions of sparse canonical correlation analysis with applications to genomic data

Cited In (only showing first 100 items - show all)

• Canonical correlation analysis for elliptical copulas
• Certifiably optimal sparse principal component analysis
• IPF-LASSO: integrative \(L_1\)-penalized regression with penalty factors for prediction based on multi-omics data
• Joint and individual variation explained (JIVE) for integrated analysis of multiple data types
• Eigenvector-based sparse canonical correlation analysis: fast computation for estimation of multiple canonical vectors
• Alternating maximization: unifying framework for 8 sparse PCA formulations and efficient parallel codes
• WGCNA
• glasso
• nlmeU
• dynamicTreeCut
• GO.db
• ordPens
• SQOPT
• GPLP
• gNCA
• CCA
• PTA
• JIVE
• mixOmics
• spls
• ESSC
• cmprskQR
• hglasso
• penalizedLDA
• siggenes
• ROBPCA
• Colibri
• scout
• plsdof
• SoNIA
• spcov
• clusterRepro
• ADE-4
• Tensorlab
• FADA
• mplot
• RGCCA
• Knorm
• sparcl
• LAS
• denoiseR
• ExPosition
• survcomp
• A feasible method for optimization with orthogonality constraints
• dChipSNP
• missMethyl
• FLLat
• WhiteStripe
• Rmtstat
• Matrix eQTL
• rmscca
• R2GUESS
• c060
• msda
• chemometrics
• GSPPCA
• CCP
• LowRankModels
• Pyglrm
• AJIVE
• ePCA
• Wikipedia2Vec
• MetaboAnalyst
• ToppGene Suite
• ccaPP
• MMS
• SOFAR
• Optimal-SPCA
• clusterCrit
• Ristretto
• MultiMed
• GPSeq
• MultilayerExtraction
• MorphoPy
• Angle-based joint and individual variation explained
• A penalized matrix decomposition, with applications to sparse principal components and canonical correlation analysis
• Extensions of sparse canonical correlation analysis with applications to genomic data
• Resistant multiple sparse canonical correlation
• FASTA
• MetabolAnalyze
• slingshot
• cate
• Title not available (Why is that?)
• MADMM
• transCCA
• HS_GHS
• Europarl
• cvCovEst
• scca
• MultiVis
• RFCCA
• prinvars
• Large Covariance Estimation by Thresholding Principal Orthogonal Complements
• Sparse operator compression of higher-order elliptic operators with rough coefficients
• Structured sparsity through convex optimization
• Kernel generalized canonical correlation analysis
• Robust groupwise least angle regression
• Sparse principal component analysis via variable projection
• Sparse-smooth regularized singular value decomposition
• A sparse rank-1 approximation algorithm for high-order tensors

This page was built for software: PMA