swMATH23963MaRDI QIDQ35724FDOQ35724
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Official website: https://arxiv.org/abs/1409.7208
Source code repository: https://github.com/voutcn/megahit
Cited In (48)
- MULKSG: \textit{MUL}tiple \textit{K} \textit{S}imultaneous \textit{G}raph assembly
- A tale of optimizing the space taken by de Bruijn graphs
- Wheeler graphs: a framework for BWT-based data structures
- BrownieAligner
- BMC3C
- HMD-ARG
- Bidirectional Variable-Order de Bruijn Graphs
- AMBER
- ARACHNE
- IDBA-Tran
- IDBA-UD
- FragGeneScan
- SOAPdenovo
- ABySS
- QUAST
- Meta-IDBA
- SPAdes
- Velvet
- MetaProb
- DARRC
- MULKSG
- Phusion
- deBGA
- BWA
- The complexity of approximate pattern matching on de Bruijn graphs
- Squeakr
- Binning_refiner
- CLMB
- CheckM
- BlastGraph
- DLBI
- fastp
- GTDB-Tk
- GraphBin
- IDBA
- metaGEM
- MetaWRAP
- MetaCoAG
- METAMVGL
- metaSPAdes
- metaFlye
- Centrifuge
- MaxBin
- MetaBAT
- oblr
- SolidBin
- CLMB: deep contrastive learning for robust metagenomic binning
- MetaCoAG: binning metagenomic contigs via composition, coverage and assembly graphs
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