Structural Alignment of Pseudoknotted RNA

DOI10.1007/11732990_13MaRDI QIDQ3596282zbMATH OpenOpenAlexFDO

Authors Banu Dost, Buhm Han, Shaojie Zhang, Vineet Bafna

Publication date 30 August 2007

Published in Lecture Notes in Computer Science (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/11732990_13

zbMATH Keywords

eukaryotic pseudoknotsnon-coding RNAoptimum structural alignmentpseudoknotted RNA

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20)

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• scientific article; zbMATH DE number 5642723
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Cited in

(11)

• Combinatorial design of pseudoknot RNA
• Detecting conserved secondary structures in RNA molecules using constrained structural alignment
• Pseudoknot-generating operation
• Fixed Parameter Tractable Alignment of RNA Structures Including Arbitrary Pseudoknots
• Seed-Based Exclusion Method for Non-coding RNA Gene Search
• Profiling and Searching for RNA Pseudoknot Structures in Genomes
• Computational Science – ICCS 2005
• Algorithms and Computation
• Classifying RNA pseudoknotted structures
• PSSMTS: Position specific scoring matrices on tree structures
• DARN! A weighted constraint solver for RNA motif localization

Describes a project that uses

Uses Software

• Rfam

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