A model selection criterion for model-based clustering of annotated gene expression data

DOI10.1515/sagmb-2014-0095zbMath1330.92080OpenAlexW2293312307WikidataQ31004690 ScholiaQ31004690MaRDI QIDQ5962695

Mélina Gallopin, Florence Jaffrézic, Gilles Celeux, Andrea Rau

Publication date: 16 February 2016

Published in: Statistical Applications in Genetics and Molecular Biology (Search for Journal in Brave)

Full work available at URL: https://hal.inria.fr/hal-01255908/file/2015_Gallopin_SAGMB_1.pdf

zbMATH Keywords

model selectionmodel-based clusteringfunctional gene annotationgene expression data

Mathematics Subject Classification ID

Classification and discrimination; cluster analysis (statistical aspects) (62H30) General biostatistics (92B15) Genetics and epigenetics (92D10) Statistical ranking and selection procedures (62F07)

Uses Software

• Bioconductor
• edgeR
• Mixmod
• DEseq
• Rmixmod
• KEGG
• Voom
• MSigDB

Cites Work

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• Choosing starting values for the EM algorithm for getting the highest likelihood in multivariate Gaussian mixture models
• Model-based cluster and discriminant analysis with the MIXMOD software
• Estimating the dimension of a model
• A latent variables approach for clustering mixed binary and continuous variables within a Gaussian mixture model
• Enhancing the selection of a model-based clustering with external categorical variables
• Linear Models and Empirical Bayes Methods for Assessing Differential Expression in Microarray Experiments

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