The sampling theory of neutral alleles and an urn model in population genetics

DOI10.1007/BF00276386zbMath0636.92007WikidataQ52610558 ScholiaQ52610558MaRDI QIDQ1098799

Fred M. Hoppe

Publication date: 1987

Published in: Journal of Mathematical Biology (Search for Journal in Brave)

zbMATH Keywords

population geneticsgenealogysize-biased samplingPoisson-Dirichlet distributionurn processage distribution of the infinitely many alleles diffusion modelEwen's sampling formulaKingman's coalescent with mutationPolya-like urn

Mathematics Subject Classification ID

Applications of Markov chains and discrete-time Markov processes on general state spaces (social mobility, learning theory, industrial processes, etc.) (60J20) Genetics and epigenetics (92D10)

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Cites Work

• Unnamed Item
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• Line-of-descent and genealogical processes, and their applications in population genetics models
• Lines of descent and the coalescent
• Pólya-like urns and the Ewens' sampling formula
• The genetic divergence of two populations
• The infinitely-many-sites model as a measure-valued diffusion
• The population structure associated with the Ewens sampling formula
• Lines of descent in the diffusion approximation of neutral Wright-Fisher models
• The coalescent
• Models for the logarithmic species abundance distributions
• Reversibility and the age of an allele. I: Moran's infinitely many neutral alleles model
• Is the most frequent allele the oldest?
• Ferguson distributions via Polya urn schemes
• Simulating allele frequencies in a population and the genetic differentiation of populations under mutation pressure
• The sampling theory of selectively neutral alleles
• Addendum to a paper of W. Ewens
• Posterior Moments of the Number of Species in a Finite Population and the Posterior Probability of Finding a New Species
• On the genealogy of nested subsamples from a haploid population
• The ages of alleles and a coalescent
• The infinitely-many-neutral-alleles diffusion model
• A note on the geometric series as a species frequency model
• The stationary distribution of the infinitely-many neutral alleles diffusion model
• Random partitions in population genetics
• Size-biased filtering of Poisson–Dirichlet samples with an application to partition structures in genetics
• On a conjecture of G. A. Watterson
• The sampling theory of selectively neutral alleles
• Concepts of Independence for Proportions with a Generalization of the Dirichlet Distribution

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