Bernstein's second theorem and Viro's method for sparse polynomial systems in chemistry

DOI10.1016/j.aam.2004.04.003zbMath1075.65074OpenAlexW2101795899MaRDI QIDQ1775738

Karin Gatermann, Matthias Wolfrum

Publication date: 4 May 2005

Published in: Advances in Applied Mathematics (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.aam.2004.04.003

zbMATH Keywords

bipartite graphpositive solutionsdynamical systemdirected graphgraph-theoretic methodsparse polynomial systems

Mathematics Subject Classification ID

Applications of graph theory (05C90) Numerical computation of solutions to systems of equations (65H10) Real polynomials: location of zeros (26C10) Molecular structure (graph-theoretic methods, methods of differential topology, etc.) (92E10)

Related Items

Parametric toricity of steady state varieties of reaction networks ⋮ Toric ideals of weighted oriented graphs ⋮ Multistationarity in mass action networks with applications to ERK activation ⋮ Translated chemical reaction networks ⋮ Regions of multistationarity in cascades of Goldbeter-Koshland loops ⋮ Toric ideals and graph theory to analyze Hopf bifurcations in mass action systems ⋮ Multistationarity in the activation of a MAPK: parametrizing the relevant region in parameter space ⋮ How far is complex balancing from detailed balancing? ⋮ Efficiently and effectively recognizing toricity of steady state varieties ⋮ Toric dynamical systems ⋮ Preface ⋮ Multi-Rees algebras and toric dynamical systems ⋮ Lower bounds for positive roots and regions of multistationarity in chemical reaction networks

Uses Software

• SINGULAR
• FluxAnalyzer

Cites Work

• Constructions and complexity of secondary polytopes
• A pivoting algorithm for convex hulls and vertex enumeration of arrangements and polyhedra
• Chemical mechanism structure and the coincidence of the stoichiometric and kinetie subspaces
• Polyhedral end games for polynomial continuation
• A family of sparse polynomial systems arising in chemical reaction systems
• Gröbner bases of toric varieties
• The existence and uniqueness of steady states for a class of chemical reaction networks
• Multiple steady states for chemical reaction networks of deficiency one
• Binomial ideals
• Polynomial Equations and Convex Polytopes
• Introduction to Toric Varieties. (AM-131)
• Asymptotes and Intercepts of Real-Power Polynomial Surfaces from the Geometry of the Exponent Polytope
• A Polyhedral Method for Solving Sparse Polynomial Systems
• Global stability of complex balanced mechanisms
• Unnamed Item
• Unnamed Item
• Unnamed Item
• Unnamed Item
• Unnamed Item
• Unnamed Item
• Unnamed Item
• Unnamed Item
• Unnamed Item
• Unnamed Item
• Unnamed Item
• Unnamed Item