Novel scales based on hydrophobicity indices for secondary protein structure

DOI10.1016/j.jtbi.2007.05.017zbMath1451.92239OpenAlexW2080145151WikidataQ30362342 ScholiaQ30362342MaRDI QIDQ2211604

Lukasz A. Kurgan, Wojciech Stach, Ji-Shou Ruan

Publication date: 11 November 2020

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jtbi.2007.05.017

zbMATH Keywords

fuzzy cognitive mapshydrophobicitysecondary protein structure

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20) Computational methods for problems pertaining to biology (92-08)

Related Items (5)

Use of fuzzy clustering technique and matrices to classify amino acids and its impact to Chou's pseudo amino acid composition ⋮ A study of entropy/clarity of genetic sequences using metric spaces and fuzzy sets ⋮ Prediction protein structural classes with pseudo-amino acid composition: approximate entropy and hydrophobicity pattern ⋮ Predicting protein structural class based on multi-features fusion ⋮ Predicting protein structural classes with pseudo amino acid composition: an approach using geometric moments of cellular automaton image

Uses Software

• Euk-PLoc
• Virus-ploc
• Hum-mPLoc
• Hum-PLoc
• Gpos-PLoc

Cites Work

• SLLE for predicting membrane protein types
• Prediction of structural classes for protein sequences and domains--impact of prediction algorithms, sequence representation and homology, and test procedures on accuracy
• Tackling real-coded genetic algorithms: operators and tools for behavioural analysis
• Predicting enzyme family classes by hybridizing gene product composition and pseudo-amino acid composition
• Using stacked generalization to predict membrane protein types based on pseudo-amino acid composition
• Fuzzy KNN for predicting membrane protein types from pseudo-amino acid composition
• Pseudo amino acid composition and multi-class support vector machines approach for conotoxin superfamily classification
• Using pseudo-amino acid composition and support vector machine to predict protein structural class
• Genetic learning of fuzzy cognitive maps
• Fuzzy cognitive maps

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