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swMATH25948MaRDI QIDQ37681

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Related Items (30)

Modeling promoter search by \textit{E. coli} RNA polymerase: one-dimensional diffusion in a sequence-dependent energy landscape ⋮ Wilks' Λ Dissimilarity Measures for Gene Clustering: An Approach Based on the Identification of Transcription Modules ⋮ Binding of transcription factors adapts to resolve information-energy tradeoff ⋮ Modeling for evolving biological networks with scale-free connectivity, hierarchical modularity, and disassortativity ⋮ Modeling and Analysis of Gene Regulatory Networks ⋮ Bayesian Variational Inference for Exponential Random Graph Models ⋮ Embedding of biological regulatory networks and property preservation ⋮ Mathematical conditions for induced cell differentiation and trans-differentiation in adult cells ⋮ Genome size and operon content ⋮ Computational prediction of conserved operons and phylogenetic footprinting of transcription regulatory elements in the metal-reducing bacterial family \textit{Geobacteraceae} ⋮ Bayesian joint modeling of multiple gene networks and diverse genomic data to identify target genes of a transcription factor ⋮ The recognition and prediction of \(\sigma^{70}\) promoters in \textit{Escherichia coli} K-12 ⋮ A modified Ising model of Barabási-Albert network with gene-type spins ⋮ Ranking of network elements based on functional substructures ⋮ Information content based model for the topological properties of the gene regulatory network of \textit{Escherichia coli} ⋮ Regulatory dynamics of standard two-component systems in bacteria ⋮ Computational challenges in systems biology ⋮ Gene regulatory networks. Methods and protocols ⋮ Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea ⋮ A hybrid promoter analysis methodology for prokaryotic genomes ⋮ Operon prediction based on SVM ⋮ Directionality of real world networks as predicted by path length in directed and undirected graphs ⋮ Fast computing global structural balance in signed networks based on memetic algorithm ⋮ Dynamics of transcription of closely spaced promoters in \textit{Escherichia coli}, one event at a time ⋮ Transcription factor binding sites detection by using alignment-based approach ⋮ BacPP: bacterial promoter prediction -- a tool for accurate sigma-factor specific assignment in enterobacteria ⋮ Characteristics of Promoter Architecture-Dependent Expression Noise and Bursting Kinetics ⋮ A mixed-integer optimization framework for the synthesis and analysis of regulatory networks ⋮ Effects of alternative connectivity on behavior of randomly constructed Boolean networks ⋮ Constrained Community-Based Gene Regulatory Network Inference

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