sma
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Software:51848
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Source code repository: https://github.com/cran/sma
Related Items (46)
Determining and analyzing differentially expressed genes from cDNA microarray experiments with complementary designs ⋮ Analyzing factorial designed microarray experiments ⋮ Simultaneous confidence intervals for differential gene expressions ⋮ Sparse matrix linear models for structured high-throughput data ⋮ Multi-group cancer outlier differential gene expression detection ⋮ Statistical analysis of the Shapley value for microarray games ⋮ Selecting features in microarray classification using roc curves ⋮ A multivariate empirical Bayes statistic for replicated microarray time course data ⋮ A statistical methodology to select covariates in high-dimensional data under dependence. Application to the classification of genetic profiles in oncology ⋮ A statistical method for measuring activation of gene regulatory networks ⋮ Privacy preserving feature selection and multiclass classification for horizontally distributed data ⋮ Segmenting microarray images using a contour-based method ⋮ Expression profiles in the progression of ductal carcinoma in the breast ⋮ Signaling perturbations induced by invading \textit{H. pylori} proteins in the host epithelial cells: a mathematical modeling approach ⋮ Evaluation of false discovery rate and power via sample size in microarray studies ⋮ Statistical analysis of C‐DNA microarray data for sample clustering and gene identification ⋮ Statistical challenges in functional genomics. (With comments and a rejoinder). ⋮ Multiple hypothesis testing in microarray experiments. ⋮ A statistical framework for the analysis of microarray probe-level data ⋮ A look at multiplicity through misclassification ⋮ Spatial Correlation of Gene Expression Measures in Tissue Microarray Core Analysis ⋮ Hadamard matrix methods in identifying differentially expressed genes from microarray experi\-ments ⋮ Transformations, background estimation, and process effects in the statistical analysis of microarrays ⋮ A new class of mixture models for differential gene expression in DNA microarray data ⋮ A two-stage empirical Bayes method for identifying differentially expressed genes ⋮ A permutation test motivated by microarray data analysis ⋮ Balancing type one and two errors in multiple testing for differential expression of genes ⋮ Exploration of distributional models for a novel intensity-dependent normalization procedure in censored gene expression data ⋮ Joint adaptive mean-variance regularization and variance stabilization of high dimensional data ⋮ An optimal choice of window width for LOWESS normalization of microarray data ⋮ A statistical framework for testing functional categories in microarray data ⋮ Intensity-dependent normalization in microarray analysis: a note of concern ⋮ Sequential prediction bounds for identifying differentially expressed genes in replicated microarray experiments ⋮ ChIP‐chip: Data, Model, and Analysis ⋮ MAOSA: A new procedure for detection of differential gene expression ⋮ Gaga: a parsimonious and flexible model for differential expression analysis ⋮ Extracting gene regulation information for cancer classification ⋮ A perceptually optimised bivariate visualisation scheme for high-dimensional fold-change data ⋮ Optimal feature selection for sparse linear discriminant analysis and its applications in gene expression data ⋮ Power and stability comparisons of multiple testing procedures with false discovery rate control ⋮ Simultaneous rank tests for detecting differentially expressed genes ⋮ Identifying differentially expressed genes in dye-swapped microarray experiments of small sample size ⋮ Class prediction and gene selection for DNA microarrays using regularized sliced inverse regression ⋮ New normalization methods using support vector machine quantile regression approach in microarray analysis ⋮ Thresholding rules for recovering a sparse signal from microarray experiments ⋮ A systematic statistical linear modeling approach to oligonucleotide array experiments
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