A Simple Hyper-Geometric Approach for Discovering Putative Transcription Factor Binding Sites

DOI10.1007/3-540-44696-6_22MaRDI QIDQ4801167zbMATH OpenOpenAlexFDO

Authors Yoseph Barash, Gill Bejerano, Nir Friedman

Publication date 6 April 2003

Published in Lecture Notes in Computer Science (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/3-540-44696-6_22

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Biochemistry, molecular biology (92C40)

Recommendations

• Efficient identification of transcription factor binding sites with a graph theoretic approach
• A transdimensional Bayesian model for pattern recognition in DNA sequences
• Finding transcription factor binding motifs for coregulated genes by combining sequence overrepresentation with cross-species conservation
• Transcription factor-binding site identification and gene classification via fusion of the supervised-weighted discrete kernel clustering and support vector machine
• Context dependent models for discovery of transcription factor binding sites

Cited in

(19)

• Discovering cis-regulatory modules by optimizing barbecues
• Computational discovery of gene regulatory binding motifs: a Bayesian perspective
• Transcription factor binding sites detection by using alignment-based approach
• Efficient identification of transcription factor binding sites with a graph theoretic approach
• Combining experts in order to identify binding sites in yeast and mouse genomic data
• Heterogeneity in DNA multiple alignments: modeling, inference, and applications in motif finding
• scientific article; zbMATH DE number 2040709 (Why is no real title available?)
• On the Power of Profiles for Transcription Factor Binding Site Detection
• The p53MH algorithm and its application in detecting p53-responsive genes
• Finding transcription factor binding motifs for coregulated genes by combining sequence overrepresentation with cross-species conservation
• Transcription factor-binding site identification and gene classification via fusion of the supervised-weighted discrete kernel clustering and support vector machine
• An efficient algorithm for deciphering regulatory motifs
• Extended sunflower hidden Markov models for the recognition of homotypic cis-regulatory modules
• Supervised Detection of Conserved Motifs in DNA Sequences with Cosmo
• Research in Computational Molecular Biology
• Research in Computational Molecular Biology
• Advances in Neural Networks – ISNN 2005
• Context dependent models for discovery of transcription factor binding sites
• Establishing a statistic model for recognition of steroid hormone response elements

This page was built for publication: A Simple Hyper-Geometric Approach for Discovering Putative Transcription Factor Binding Sites

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q4801167)