Combining Intra- and Inter-cellular Dynamics to Investigate Intestinal Homeostasis

DOI10.1007/978-3-540-68413-8_5MaRDI QIDQ3506868zbMATH OpenOpenAlexFDO

Authors Oksana Tymchyshyn, Marta Kwiatkowska

Publication date 17 June 2008

Published in Formal Methods in Systems Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/978-3-540-68413-8_5

zbMATH Keywords

cell fate determinationintestinal homeostasisstochastic \(\pi \)-calculus

Mathematics Subject Classification ID

Models and methods for concurrent and distributed computing (process algebras, bisimulation, transition nets, etc.) (68Q85) Physiology (general) (92C30) Systems biology, networks (92C42)

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Cites work

• BioAmbients: an abstraction for biological compartments
• Elucidating the interactions between the adhesive and transcriptional functions of \(\beta\)-catenin in normal and cancerous cells
• Mobile ambients
• Probabilistic model checking of complex biological pathways

Cited in

(8)

• A PDMP model of the epithelial cell turn-over in the intestinal crypt including microbiota-derived regulations
• Smoluchowski Reaction Kinetics for Reactions of Any Order
• Mathematical modelling and experiments for the proliferation and differentiation of \textit{Drosophila} intestinal stem cells. I.
• Mathematical modelling and experiments for the proliferation and differentiation of \textit{Drosophila} intestinal stem cells. II
• Process Algebra Modelling Styles for Biomolecular Processes
• Constructing and visualizing chemical reaction networks from pi-calculus models
• Modular modelling of signalling pathways and their cross-talk
• Delay-driven oscillations via axin2 feedback in the Wnt/\(\beta\)-catenin signalling pathway

Describes a project that uses

Uses Software

• BioSPI

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