Bayesian Parameter Identification in Cahn--Hilliard Models for Biological Growth
From MaRDI portal
Publication:5228367
Bayesian inference (62F15) Monte Carlo methods (65C05) PDEs in connection with biology, chemistry and other natural sciences (35Q92) Inverse problems for PDEs (35R30) Numerical methods for inverse problems for initial value and initial-boundary value problems involving PDEs (65M32) General biology and biomathematics (92B05) Cell movement (chemotaxis, etc.) (92C17) Numerical methods for initial value problems involving ordinary differential equations (65L05)
Abstract: We consider the inverse problem of parameter estimation in a diffuse interface model for tumour growth. The model consists of a fourth-order Cahn-Hilliard system and contains three phenomenological parameters: the tumour proliferation rate, the nutrient consumption rate, and the chemotactic sensitivity. We study the inverse problem within the Bayesian framework and construct the likelihood and noise for two typical observation settings. One setting involves an infinite-dimensional data space where we observe the full tumour. In the second setting we observe only the tumour volume, hence the data space is finite-dimensional. We show the well-posedness of the posterior measure for both settings, building upon and improving the analytical results in [C. Kahle and K.F. Lam, Appl. Math. Optim. (2018)]. A numerical example involving synthetic data is presented in which the posterior measure is numerically approximated by the sequential Monte Carlo approach with tempering.
Recommendations
- The stochastic quasi-chemical model for bacterial growth: variational Bayesian parameter update
- Bayesian inversion of a diffusion model with application to biology
- Approximate Bayesian computation reveals the importance of repeated measurements for parameterising cell-based models of growing tissues
- Bayesian modeling of bacterial growth for multiple populations
- Bayesian calibration, validation, and uncertainty quantification of diffuse interface models of tumor growth
- Bayesian estimation for the GreenLab plant growth model with deterministic organogenesis
- Bayesian modeling of embryonic growth using latent variables
- Bayesian optimal design for ordinary differential equation models with application in biological science
- A Bayesian Approach to Modeling Biological Pattern Formation with Limited Data
Cites work
- scientific article; zbMATH DE number 1223843 (Why is no real title available?)
- scientific article; zbMATH DE number 2117879 (Why is no real title available?)
- scientific article; zbMATH DE number 885958 (Why is no real title available?)
- A Cahn-Hilliard-Darcy model for tumour growth with chemotaxis and active transport
- A fully asynchronous multifrontal solver using distributed dynamic scheduling
- A multiphase Cahn-Hilliard-Darcy model for tumour growth with necrosis
- A smooth penalty approach and a nonlinear multigrid algorithm for elliptic MPECs
- An adaptive finite-element Moreau–Yosida-based solver for a non-smooth Cahn–Hilliard problem
- Asymptotic Statistics
- Automated solution of differential equations by the finite element method. The FEniCS book
- Bayesian calibration of computer models. (With discussion)
- Bayesian calibration, validation and uncertainty quantification for predictive modelling of tumour growth: a tutorial
- Bayesian calibration, validation, and uncertainty quantification of diffuse interface models of tumor growth
- Bayesian inverse problems for functions and applications to fluid mechanics
- Convergence analysis of surrogate-based methods for Bayesian inverse problems
- Design of adaptive finite element software. The finite element toolbox ALBERTA. With CD-ROM
- Dimensionality reduction and polynomial chaos acceleration of Bayesian inference in inverse problems
- General diffuse-interface theories and an approach to predictive tumor growth modeling
- Importance sampling: intrinsic dimension and computational cost
- Interpolation of spatial data. Some theory for kriging
- Introduction to Bayesian Scientific Computing
- Introduction to uncertainty quantification
- Inverse Problem Theory and Methods for Model Parameter Estimation
- Inverse problems: a Bayesian perspective
- MCMC METHODS FOR DIFFUSION BRIDGES
- MCMC methods for functions: modifying old algorithms to make them faster
- Models for the Growth of a Solid Tumor by Diffusion
- Multilevel sequential Monte Carlo for Bayesian inverse problems
- Nonlinear simulations of solid tumor growth using a mixture model: invasion and branching
- Numerical simulation of a thermodynamically consistent four-species tumor growth model
- On the brittleness of Bayesian inference
- On the convergence of adaptive sequential Monte Carlo methods
- Parameter identification via optimal control for a Cahn-Hilliard-chemotaxis system with a variable mobility
- Penalising model component complexity: a principled, practical approach to constructing priors
- Posterior consistency for Gaussian process approximations of Bayesian posterior distributions
- Selection and assessment of phenomenological models of tumor growth
- Selection and validation of predictive models of radiation effects on tumor growth based on noninvasive imaging data
- Selection, calibration, and validation of models of tumor growth
- Sequential Monte Carlo Samplers
- Sequential Monte Carlo methods for Bayesian elliptic inverse problems
- Sequential Monte Carlo methods for high-dimensional inverse problems: a case study for the Navier-Stokes equations
- Sparse deterministic approximation of Bayesian inverse problems
- Sparse, adaptive Smolyak quadratures for Bayesian inverse problems
- Statistical and computational inverse problems.
- Stochastic spectral methods for efficient Bayesian solution of inverse problems
- The Cahn–Hilliard gradient theory for phase separation with non-smooth free energy Part I: Mathematical analysis
- Three-dimensional multispecies nonlinear tumor growth. I: Model and numerical method
- Three-dimensional multispecies nonlinear tumor growth. II: Tumor invasion and angiogenesis
- Toward predictive multiscale modeling of vascular tumor growth, computational and experimental oncology for tumor prediction
- Uncertainty Quantification and Weak Approximation of an Elliptic Inverse Problem
- Well-posedness of a Cahn-Hilliard system modelling tumour growth with chemotaxis and active transport
Cited in
(16)- Generalized parallel tempering on Bayesian inverse problems
- On the well-posedness of Bayesian inverse problems
- On uniqueness and stable estimation of multiple parameters in the Cahn–Hilliard equation
- A practical example for the non-linear Bayesian filtering of model parameters
- A computational framework for Bayesian inference in plasticity models characterisation
- Parameter identification via optimal control for a Cahn-Hilliard-chemotaxis system with a variable mobility
- Weak and stationary solutions to a Cahn-Hilliard-Brinkman model with singular potentials and source terms
- Bayesian model selection framework for identifying growth patterns in filamentous fungi
- Weak and TV consistency in Bayesian uncertainty quantification using disintegration
- On a class of non-local phase-field models for tumor growth with possibly singular potentials, chemotaxis, and active transport
- Parameter identification for nonlocal phase field models for tumor growth via optimal control and asymptotic analysis
- Image inversion and uncertainty quantification for constitutive laws of pattern formation
- Bayesian Inverse Problems Are Usually Well-Posed
- Bayesian inference of force dynamics during morphogenesis
- A unified Bayesian inversion approach for a class of tumor growth models with different pressure laws
- Error control of the numerical posterior with Bayes factors in Bayesian uncertainty quantification
This page was built for publication: Bayesian Parameter Identification in Cahn--Hilliard Models for Biological Growth
Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q5228367)
