A multi-time-scale analysis of chemical reaction networks. II: Stochastic systems

DOI10.1007/s00285-016-0980-xzbMath1353.92049arXiv1508.05990OpenAlexW2240819236WikidataQ50698494 ScholiaQ50698494MaRDI QIDQ728539

Hans G. Othmer, Xingye Kan, Chang Hyeong Lee

Publication date: 20 December 2016

Published in: Journal of Mathematical Biology (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1508.05990

zbMATH Keywords

singular perturbationstochastic dynamicsgraph theoryreaction networks

Mathematics Subject Classification ID

Applications of graph theory (05C90) Kinetics in biochemical problems (pharmacokinetics, enzyme kinetics, etc.) (92C45) Chemical kinetics in thermodynamics and heat transfer (80A30) Multiple scale methods for ordinary differential equations (34E13)

Related Items (7)

Fast reactions with non-interacting species in stochastic reaction networks ⋮ Stochastic enzyme kinetics and the quasi-steady-state reductions: application of the slow scale linear noise approximation à la Fenichel ⋮ The Status of the QSSA Approximation in Stochastic Simulations of Reaction Networks ⋮ Controllability of heterogeneous multiagent systems with two-time-scale feature ⋮ Controllability of impulsive singularly perturbed systems and its application to a class of multiplex networks ⋮ Solving the chemical master equation for monomolecular reaction systems and beyond: a Doi-Peliti path integral view ⋮ Noise-induced mixing and multimodality in reaction networks

Cites Work

• Unnamed Item
• Unnamed Item
• Unnamed Item
• A stochastic analysis of first-order reaction networks
• Stochastic analysis of reaction-diffusion processes
• Product-form stationary distributions for deficiency zero chemical reaction networks
• Markovian dynamics on complex reaction networks
• Solving the chemical master equation for monomolecular reaction systems analytically
• A reduction method for multiple time scale stochastic reaction networks
• The effects of cell density and metabolite flux on cellular dynamics
• The role of dimerization in noise reduction of simple genetic networks
• A multi-time-scale analysis of chemical reaction networks. I: Deterministic systems
• Constrained approximation of effective generators for multiscale stochastic reaction networks and application to conditioned path sampling
• Hybrid method for the chemical master equation
• Product forms for queueing networks with state-dependent multiple job transitions
• Adaptive Discrete Galerkin Methods Applied to the Chemical Master Equation
• Markov Chains
• Hybrid Stochastic--Deterministic Solution of the Chemical Master Equation
• Strong Convergence and Speed up of Nested Stochastic Simulation Algorithm
• Stochastic approach to chemical kinetics

This page was built for publication: A multi-time-scale analysis of chemical reaction networks. II: Stochastic systems