A stochastic analysis of first-order reaction networks
From MaRDI portal
Publication:263503
DOI10.1016/j.bulm.2004.09.009zbMath1334.92473OpenAlexW2128014106WikidataQ52408050 ScholiaQ52408050MaRDI QIDQ263503
Chang Hyeong Lee, Hans G. Othmer, Chetan J. Gadgil
Publication date: 5 April 2016
Published in: Bulletin of Mathematical Biology (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1016/j.bulm.2004.09.009
Classical flows, reactions, etc. in chemistry (92E20) Markov chains (discrete-time Markov processes on discrete state spaces) (60J10) Ordinary differential equations and systems with randomness (34F05)
Related Items
Stochastic models and numerical algorithms for a class of regulatory gene networks ⋮ Cell-Based, Continuum and Hybrid Models of Tissue Dynamics ⋮ Dynamics of master equations with time-recurrent structure ⋮ Multiscale Simulation of Stochastic Reaction-Diffusion Networks ⋮ Model Reduction for Stochastic Reaction Systems ⋮ Analytical results for a stochastic model of gene expression with arbitrary partitioning of proteins ⋮ A graph-based approach for the approximate solution of the chemical master equation ⋮ Solving the chemical master equation for monomolecular reaction systems analytically ⋮ Product-form stationary distributions for deficiency zero chemical reaction networks ⋮ Poisson distributions in stochastic dynamics of gene expression: what events do they count? ⋮ A numerical characteristic method for probability generating functions on stochastic first-order reaction networks ⋮ Propagation of fluctuations in biochemical systems. I: Linear SSC networks ⋮ Lyapunov functions, stationary distributions, and non-equilibrium potential for reaction networks ⋮ Linear processes in stochastic population dynamics: theory and application to insect development ⋮ Stochastic aspects of asymmetric autocatalysis and absolute asymmetric synthesis ⋮ An analytical approach to solutions of master equations for stochastic nonlinear reactions ⋮ Exact and approximate distributions of protein and mRNA levels in the low-copy regime of gene expression ⋮ Distributions for negative-feedback-regulated stochastic gene expression: dimension reduction and numerical solution of the chemical master equation ⋮ A stochastic analysis of actin polymerization in the presence of twinfilin and gelsolin ⋮ Editorial: Special issue on stochastic modelling of reaction-diffusion processes in biology ⋮ Stochastic analysis of reaction-diffusion processes ⋮ Stochastic modelling of chromosomal segregation: errors can introduce correction ⋮ Exact probability distributions of selected species in stochastic chemical reaction networks ⋮ Solutions to the Minimum Variance Problem Using Delaunay Triangulation ⋮ One‐Dimensional Birth‐Death Process and Delbrück‐Gillespie Theory of Mesoscopic Nonlinear Chemical Reactions ⋮ The entropy method for reaction-diffusion systems without detailed balance: first order chemical reaction networks ⋮ Chemical master equation and Langevin regimes for a gene transcription model ⋮ Measuring edge importance: a quantitative analysis of the stochastic shielding approximation for random processes on graphs ⋮ Hybrid simulation of autoregulation within transcription and translation ⋮ A new method for choosing the computational cell in stochastic reaction-diffusion systems ⋮ Improving parameter inference from FRAP data: an analysis motivated by pattern formation in the \textit{Drosophila} wing disc ⋮ The dynamics of stochastic mono-molecular reaction systems in stochastic environments ⋮ A multi-time-scale analysis of chemical reaction networks. II: Stochastic systems ⋮ Bistable stochastic biochemical networks: highly specific systems with few chemicals ⋮ Bistable stochastic biochemical networks: large chemical networks and systems with many molecules ⋮ A random walk approach to transport in tissues and complex media: from microscale descriptions to macroscale models ⋮ Markovian dynamics on complex reaction networks ⋮ MOLECULAR BIOCIRCUITS ⋮ Fast and Accurate Langevin Simulations of Stochastic Hodgkin-Huxley Dynamics ⋮ Size-independent differences between the mean of discrete stochastic systems and the corresponding continuous deterministic systems ⋮ Noise-induced mixing and multimodality in reaction networks ⋮ A reduction method for multiple time scale stochastic reaction networks ⋮ Spatial stochastic intracellular kinetics: a review of modelling approaches ⋮ Multiscale stochastic reaction-diffusion algorithms combining Markov chain models with stochastic partial differential equations ⋮ Microscopic models for chemical thermodynamics ⋮ A multi-time-scale analysis of chemical reaction networks. I: Deterministic systems ⋮ Identifiability of stochastically modelled reaction networks ⋮ External noise control in inherently stochastic biological systems ⋮ Kinetics of irreversible consecutive processes with first order second steps: analytical solutions ⋮ Variance of filtered signals: characterization for linear reaction networks and application to neurotransmission dynamics
