The geometry of biological time.
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Rythms, or periodic processes, play a central role at many levels in living systems. Think, for instance, of cell cycles, the heart beat, or `circadian' clocks of insect eclosion. This impressive monograph is probably the best source to dive into the world of biological rythms. It is the second edition of Winfree's classic published in 1980, see the review Zbl 0464.92001. It has been substantially revised by including many new developments and omitting or replacing outdated material. Numerous more or less small changes are scattered throughout the book; there are two completely new chapters, whereas other chapters have been compressed into examples. The structure is the same as before. The first ten chapters are conceptual, developing the fundamental concepts, in particular the relation between periodic processes and topology, geometry, and maps. This is substantiated by numerous examples from physical and biological systems. The other 13 chapters are devoted to concrete organismic and experimental systems of clocks and maps, most of which show phase singularities. This book is not primarily about mathematical models and their analysis, rather it concentrates on insightful mathematical descriptions of biological processses, whose biochemical bases we are just beginning to understand.
Cited in
(only showing first 100 items - show all)- Reliability of coupled oscillators
- Oscillations spatio-temporelles engendrées par un automate cellulaire
- Spike timing precision of neuronal circuits
- Existence and stability criteria for phase-locked modes in ring neural networks based on the spike time resetting curve method
- Quorum sensing in populations of spatially extended chaotic oscillators coupled indirectly via a heterogeneous environment
- Spatiotemporal control to eliminate cardiac alternans using isostable reduction
- Greater accuracy and broadened applicability of phase reduction using isostable coordinates
- Synchronization and stability for quantum Kuramoto
- Switching neuronal state: optimal stimuli revealed using a stochastically-seeded gradient algorithm
- Locally optimal extracellular stimulation for chaotic desynchronization of neural populations
- Phase reduction and phase-based optimal control for biological systems: a tutorial
- Controlling excitable wave behaviors through the tuning of three parameters
- Optimal phase control of biological oscillators using augmented phase reduction
- Pharmaceutical-based entrainment of circadian phase via nonlinear model predictive control
- Fault-tolerant synchronization control for complex dynamical networks with semi-Markov jump topology
- Integrate and fire model with refractory period for synchronization of two cardiomyocytes
- Synchronization by small time delays
- The roles of the Moran effect and dispersal in synchronizing oscillating populations
- Synchronization of coupled biological oscillators under spatially heterogeneous environmental forcing
- Dynamic mean field models: H-theorem for stochastic processes and basins of attraction of stationary processes
- Synchronization and multi-frequency oscillations in the low-dimensional chain of the self-oscillators
- Stationary and oscillatory fronts in a two-component genetic regulatory network model
- Leveraging deep learning to control neural oscillators
- Asymptotic preserving schemes for the FitzHugh-Nagumo transport equation with strong local interactions
- Diffusion-based degeneration of the collagen reinforcement in the pathologic human cornea
- Spiral wave chimeras induced by heterogeneity in phase lags and time delays
- Minimal model for oscillatory dynamics of a nonlinear chemical reaction network
- Heterogeneity of neuronal properties determines the collective behavior of the neurons in the suprachiasmatic nucleus
- Firing rate distributions in a feedforward network of neural oscillators with intrinsic and network heterogeneity
- Supervised learning algorithms for controlling underactuated dynamical systems
- Stochastic synchronization in nonlinear network systems driven by intrinsic and coupling noise
- Phase response approaches to neural activity models with distributed delay
- Quantitative comparison of the mean-return-time phase and the stochastic asymptotic phase for noisy oscillators
- Phase-dependence of response curves to deep brain stimulation and their relationship: from essential tremor patient data to a Wilson-Cowan model
- Art Winfree and the bidomain model of cardiac tissue
- Clocks and patterns in \textit{Myxobacteria}: a remembrance of Art Winfree
- Uncovering the design principles of circadian clocks: mathematical analysis of flexibility and evolutionary goals
- Bifurcations in a mathematical model for circadian oscillations of clock genes
- Sustained simultaneous glycolytic and insulin oscillations in \(\beta\)-cells
- Collective dynamics and bifurcations in symmetric networks of phase oscillators. I
- Understanding the dynamics of biological and neural oscillator networks through exact mean-field reductions: a review
- Chimera at the phase-flip transition of an ensemble of identical nonlinear oscillators
- Noise-induced variability of nonlinear dynamics in 3D model of enzyme kinetics
- Asymmetric feedback enhances rhythmicity in damaged systems of coupled fractional oscillators
- Phase distribution control of a population of oscillators
- Phase-amplitude descriptions of neural oscillator models
- Effects of asynchronism on evolutionary games
- Synchrony and asynchrony in a fully stochastic neural network
- Model of haplotype and phenotype in the evolution of a duplicated autoregulatory activator
- Synchronization of finite-state pulse-coupled oscillators
- Dynamic control of the central pattern generator for locomotion
- Engineering entrainment and adaptation in limit cycle systems
- Reflexes and preflexes: on the role of sensory feedback on rhythmic patterns in insect locomo\-tion
- Phase resetting reduces theta-gamma rhythmic interaction to a one-dimensional map
- Limit cycles and Lie symmetries
- Extreme phase sensitivity in systems with fractal isochrons
- Oscillating systems with cointegrated phase processes
- Two-cluster bifurcations in systems of globally pulse-coupled oscillators
- Synchrony and asynchrony for neuronal dynamics defined on complex networks
- Isostables, isochrons, and Koopman spectrum for the action-angle representation of stable fixed point dynamics
- Improving the precision of noisy oscillators
- Some joys and trials of mathematical neuroscience
- Bifurcation to heteroclinic cycles and sensitivity in three and four coupled phase oscillators
- Collective dynamics of globally coupled phase oscillators under multisite delayed feedback stimulation
- Rotating spirals of curvature flows: a center manifold approach
- Partial phase synchronization of neural populations due to random Poisson inputs
- From biochemistry to morphogenesis in myxobacteria
- Stochastic aspects of cardiac arrhythmias
- Analysis of neural clusters due to deep brain stimulation pulses
- Phase diffusion and noise temperature of a microwave amplifier based on single unshunted Josephson junction
- Dynamical robustness in presence of attractive-repulsive interactions
- A direct method approach for data-driven inference of high accuracy adaptive phase-isostable reduced order models
- Mathematical frameworks for oscillatory network dynamics in neuroscience
- Time and human body topology
- Collective phase description of oscillatory convection
- Asymptotic transversal stability for synchronized attractors in a metapopulation model
- Chimera states in spatiotemporal systems: theory and applications
- Extending phase reduction to excitable media: theory and applications
- A fast Eulerian approach for computation of global isochrons in high dimensions
- Network synchronization of time-delayed coupled nonlinear systems using predictor-based diffusive dynamic couplings
- Stochastic synchronization in purkinje cells with feedforward inhibition could be studied with equivalent phase-response curves
- Structure of cell networks critically determines oscillation regularity
- Global isochrons and phase sensitivity of bursting neurons
- Event-based minimum-time control of oscillatory neuron models
- scientific article; zbMATH DE number 5994090 (Why is no real title available?)
- Mathematical modeling of Behçet's disease: a dynamical systems approach
- Forward-time and backward-time isochrons and their interactions
- Nonstandard transitions in the Kuramoto model: a role of asymmetry in natural frequency distributions
- The role of timescale separation in oscillatory ensembles with competitive coupling
- Solvable model of the collective motion of heterogeneous particles interacting on a sphere
- Falling off a limit cycle using phase-agnostic stimuli: Definitions and conceptual framework
- The leaky oscillator: properties of inhibition-based rhythms revealed through the singular phase response curve
- Minimum energy desynchronizing control for coupled neurons
- scientific article; zbMATH DE number 49192 (Why is no real title available?)
- Modular stability tools for distributed computation and control
- Nonautonomous dynamics of coupled van der Pol oscillators in the regime of amplitude death
- Collective mode reductions for populations of coupled noisy oscillators
- Configurational stability for the Kuramoto-Sakaguchi model
- Time optimal control of spiking neurons
- Projections of patterns and mode interactions
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