Inference from gene trees in a subdivided population
From MaRDI portal
Publication:5939160
DOI10.1006/tpbi.1999.1447zbMath0984.92020WikidataQ33900324 ScholiaQ33900324MaRDI QIDQ5939160
Robert C. Griffiths, Melanie Bahlo
Publication date: 12 May 2002
Published in: Theoretical Population Biology (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1006/tpbi.1999.1447
population genetics; ancestral inference; coalescent process; gene trees; samples of DNA; subdivided populations; time to the most recent common ancestor
92D15: Problems related to evolution
92-08: Computational methods for problems pertaining to biology
Related Items
Importance sampling on coalescent histories. I, Importance sampling on coalescent histories. II: Subdivided population models, Inference from gene trees in a subdivided population, Times on trees, and the age of an allele, Slicing and dicing the genome: A statistical physics approach to population genetics, Experiments with the site frequency spectrum, Gene mapping via the ancestral recombination graph, The coalescence time of sampled genes in the structured coalescent model, Corridors for migration between large subdivided populations, and the structured coalescent, The coalescent in an island model of population subdivision with variation among demes., The ages of mutations in gene trees, Exact moment calculations for genetic models with migration, mutation, and drift, Maximum likelihood estimation of a migration matrix and effective population sizes in n subpopulations by using a coalescent approach, Structured coalescent with nonconservative migration, Importance sampling and the two-locus model with subdivided population structure
Uses Software
Cites Work
- Unnamed Item
- Unnamed Item
- Unnamed Item
- Estimation in an island model using simulation
- Genealogical-tree probabilities in the infinitely-many-site model
- The coalescent and genealogical process in geographically structured population
- The infinitely-many-sites model as a measure-valued diffusion
- The strong-migration limit in geographically structured populations
- The coalescent
- The strong-migration limit for the genealogical process in geographically structured populations
- On the number of segregating sites in genetical models without recombination
- Maximum likelihood estimation of population divergence times and population phylogenies under the infinite sites model
- Genealogy and subpopulation differentiation under various models of population structure.
- Simulating probability distributions in the coalescent
- The ages of mutations in gene trees
- Ancestral inference in population genetics
- Unrooted genealogical tree probabilities in the infinitely-many-sites model
- Monte Carlo inference methods in population genetics
- The age of a mutation in a general coalescent tree
- Inference in Molecular Population Genetics
- Efficient algorithms for inferring evolutionary trees
- Inference from gene trees in a subdivided population