Stochastic and delayed stochastic models of gene expression and regulation

DOI10.1016/j.mbs.2009.10.007zbMath1180.92033OpenAlexW2024498258WikidataQ37626170 ScholiaQ37626170MaRDI QIDQ846634

Andre S. Ribeiro

Publication date: 9 February 2010

Published in: Mathematical Biosciences (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.mbs.2009.10.007

zbMATH Keywords

time delaygene expressiongene regulatory network

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Systems biology, networks (92C42)

Related Items (13)

Evolving kinetics of gene expression in stochastic environments ⋮ Time-delayed models of gene regulatory networks ⋮ Denoising of genetic switches based on Parrondo's paradox ⋮ Robust and nonlinear control literature survey (No. 17) ⋮ Stochastic gene expression with delay ⋮ Bistability and delay-induced stability switches in a cancer network with the regulation of microRNA ⋮ Stochastic models of gene expression with delayed degradation ⋮ Three generic bistable scenarios of the interplay of voltage pulses and gene expression in neurons ⋮ A Delayed Mass-Action Model for the Transcriptional Control of Hmp, an NO Detoxifying Enzyme, by the Iron-Sulfur Protein FNR ⋮ Mathematical aspects of the regulation of gene transcription by promoters ⋮ Effects of elongation delay in transcription dynamics ⋮ A stochastic model of bacterial infection associated with neutrophils ⋮ Algebraic Models and Their Use in Systems Biology

Uses Software

• Gromacs
• MCELL
• GEPASI
• Cellware
• SGN Sim
• Dizzy

Cites Work

• Unnamed Item
• Gene expression time delays and Turing pattern formation systems
• Spurious oscillation in a uniform Euler discretisation of linear stochastic differential equations with vanishing delay
• A delay stochastic process with applications in molecular biology
• Stochastic kinetic modeling of vesicular stomatitis virus intracellular growth
• Boolean dynamics of networks with scale-free topology
• Variability of the distribution of differentiation pathway choices regulated by a multipotent delayed stochastic switch
• A model of sequential branching in hierarchical cell fate determination
• A proposal for using the ensemble approach to understand genetic regulatory networks
• Studying genetic regulatory networks at the molecular level: delayed reaction stochastic models
• Noisy attractors and ergodic sets in models of gene regulatory networks

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