Fuzzy KNN for predicting membrane protein types from pseudo-amino acid composition

DOI10.1016/J.JTBI.2005.08.016zbMath1447.92312OpenAlexW2010818132WikidataQ51963084 ScholiaQ51963084MaRDI QIDQ2202064

Hong-Bin Shen, Kuo-Chen Chou, Jie Yang

Publication date: 17 September 2020

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jtbi.2005.08.016

zbMATH Keywords

pseudo-amino acid compositionGPI-anchoredlipid chain-anchoredmulti-pass transmembranefuzzy K-nearest neighborsType-1Type-2

Mathematics Subject Classification ID

Fuzzy and other nonstochastic uncertainty mathematical programming (90C70) Protein sequences, DNA sequences (92D20) Cell biology (92C37)

Related Items (16)

Use of fuzzy clustering technique and matrices to classify amino acids and its impact to Chou's pseudo amino acid composition ⋮ iCDI-PseFpt: identify the channel-drug interaction in cellular networking with PseAAC and molecular fingerprints ⋮ A two-stage SVM method to predict membrane protein types by incorporating amino acid classifications and physicochemical properties into a general form of Chou's PseAAC ⋮ Predicting protein submitochondrial locations by incorporating the pseudo-position specific scoring matrix into the general Chou's pseudo-amino acid composition ⋮ IMem-2LSAAC: a two-level model for discrimination of membrane proteins and their types by extending the notion of SAAC into Chou's pseudo amino acid composition ⋮ Some remarks on protein attribute prediction and pseudo amino acid composition ⋮ Novel scales based on hydrophobicity indices for secondary protein structure ⋮ Using Chou's amphiphilic pseudo-amino acid composition and support vector machine for prediction of enzyme subfamily classes ⋮ Prediction of S-sulfenylation sites using mRMR feature selection and fuzzy support vector machine algorithm ⋮ Predicting membrane protein types by incorporating a novel feature set into Chou's general PseAAC ⋮ Predicting membrane protein types by incorporating protein topology, domains, signal peptides, and physicochemical properties into the general form of Chou's pseudo amino acid composition ⋮ Prediction of membrane protein types from sequences and position-specific scoring matrices ⋮ A study of entropy/clarity of genetic sequences using metric spaces and fuzzy sets ⋮ Prediction protein structural classes with pseudo-amino acid composition: approximate entropy and hydrophobicity pattern ⋮ The modified Mahalanobis discriminant for predicting outer membrane proteins by using Chou's pseudo amino acid composition ⋮ Predicting protein structural class based on multi-features fusion

Cites Work

• SLLE for predicting membrane protein types
• Nearest neighbor pattern classification
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