A coupled bulk-surface model for cell polarisation

DOI10.1016/J.JTBI.2018.09.008zbMath1422.92035arXiv1809.04535OpenAlexW2890039560WikidataQ91386106 ScholiaQ91386106MaRDI QIDQ2328244

Yanyan Li

Publication date: 10 October 2019

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1809.04535

zbMATH Keywords

reaction-diffusion systemscell polarisationbulk-surface finite elementsasymptotic and local perturbation theorybulk-surface wave pinning modelcoupled bulk-surface semilinear partial differential equations

Mathematics Subject Classification ID

Reaction-diffusion equations (35K57) PDEs in connection with biology, chemistry and other natural sciences (35Q92) Finite element, Rayleigh-Ritz and Galerkin methods for boundary value problems involving PDEs (65N30) Cell biology (92C37) Cell movement (chemotaxis, etc.) (92C17)

Related Items (22)

Bulk-surface coupling: derivation of two models ⋮ Deterministic and stochastic analysis for different types of regulations in the spontaneous emergence of cell polarity ⋮ Analysis of spontaneous emergence of cell polarity with delayed negative feedback ⋮ Cell repolarization: a bifurcation study of spatio-temporal perturbations of polar cells ⋮ Virtual element method for elliptic bulk‐surface PDEs in three space dimensions ⋮ Generation and Motion of Interfaces in a Mass-Conserving Reaction-Diffusion System ⋮ The Bulk-Surface Virtual Element Method for Reaction-Diffusion PDEs: Analysis and Applications ⋮ Pattern Formation Inside Living Cells ⋮ Difference potentials method for models with dynamic boundary conditions and bulk-surface problems ⋮ A moving grid finite element method applied to a mechanobiochemical model for 3D cell migration ⋮ Front propagation in the shadow wave-pinning model ⋮ Turing patterning in stratified domains ⋮ The Linear Stability of Symmetric Spike Patterns for a Bulk-Membrane Coupled Gierer--Meinhardt Model ⋮ Bulk-surface virtual element method for systems of PDEs in two-space dimensions ⋮ Phytoplankton competition for nutrients and light in a stratified lake: a mathematical model connecting epilimnion and hypolimnion ⋮ Dynamics of shadow system of a singular Gierer-Meinhardt system on an evolving domain ⋮ Long time behavior and stable patterns in high-dimensional polarity models of asymmetric cell division ⋮ Signaling gradients in surface dynamics as basis for planarian regeneration ⋮ Cell size, mechanical tension, and GTPase signaling in the single cell ⋮ Stability analysis of a bulk-surface reaction model for membrane protein clustering ⋮ A Conservative Finite Element ALE Scheme for Mass-Conservative Reaction-Diffusion Equations on Evolving Two-Dimensional Domains ⋮ Numerical investigations of the bulk-surface wave pinning model

Uses Software

• FEniCS
• Unnamed Item

Cites Work

• Unnamed Item
• Unnamed Item
• Polarization and movement of keratocytes: a multiscale modelling approach
• Turing instabilities in a mathematical model for signaling networks
• A computational method for the coupled solution of reaction-diffusion equations on evolving domains and manifolds: application to a model of cell migration and chemotaxis
• The approach of solutions of nonlinear diffusion equations to travelling front solutions
• An efficient, nonlinear stability analysis for detecting pattern formation in reaction diffusion systems
• Diffusion on a curved surface coupled to diffusion in the volume: application to cell biology
• Symmetry breaking in a bulk–surface reaction–diffusion model for signalling networks
• A Computational Model of Cell Polarization and Motility Coupling Mechanics and Biochemistry
• Asymptotic and Bifurcation Analysis of Wave-Pinning in a Reaction-Diffusion Model for Cell Polarization
• Global Existence of Solutions to Reaction-Diffusion Systems with Mass Transport Type Boundary Conditions
• Gmsh: A 3-D finite element mesh generator with built-in pre- and post-processing facilities
• Nonlocal reaction—diffusion equations and nucleation
• Analysis and Simulations of Coupled Bulk-surface Reaction-Diffusion Systems on Exponentially Evolving Volumes
• Finite element analysis for a coupled bulk-surface partial differential equation
• Stability analysis and simulations of coupled bulk-surface reaction–diffusion systems
• Finite element methods for surface PDEs

This page was built for publication: A coupled bulk-surface model for cell polarisation