Stochastic approaches for modelling in vivo reactions

From MaRDI portal
Revision as of 02:48, 3 February 2024 by Import240129110113 (talk | contribs) (Created automatically from import240129110113)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)

Publication:2490589

DOI10.1016/j.compbiolchem.2004.05.001zbMath1087.92035OpenAlexW2111724365WikidataQ35839683 ScholiaQ35839683MaRDI QIDQ2490589

T. E. Turner, Kevin Burrage, Santiago Schnell

Publication date: 16 May 2006

Published in: Computational Biology and Chemistry (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.compbiolchem.2004.05.001




Related Items

The effect of loss of immunity on noise-induced sustained oscillations in epidemicsInvestigating the two-moment characterisation of subcellular biochemical networksOptimization problems in chemical reactions using continuous-time Markov chainsDeveloping Itô stochastic differential equation models for neuronal signal transduction path\-waysA mesoscopic simulation approach for modeling intracellular reactionsSolving the chemical master equation for monomolecular reaction systems analyticallyTowards uncertainty quantification and inference in the stochastic SIR epidemic modelControlled diffusion processes with Markovian switchings for modeling dynamical engineering systemsStrong approximations of stochastic differential equations with jumpsDiscrete-state stochastic models of calcium-regulated calcium influx and subspace dynamics are not well-approximated by ODEs that neglect concentration fluctuationsComputational Probability for Systems BiologyCoexistence of activator and inhibitor for Brusselator diffusion system in chemical or biochemical reactionsEstimating epidemic parameters: application to H1N1 pandemic dataThe total quasi-steady-state approximation for fully competitive enzyme reactionsA quasistationary analysis of a stochastic chemical reaction: Keizer's paradoxThe quasi-steady-state approximations revisited: timescales, small parameters, singularities, and normal forms in enzyme kineticsMean square exponential stability of stochastic genetic regulatory networks with time-varying delaysMultifractality in intracellular enzymatic reactionsAccurate Particle-Based Reaction Algorithms for Fixed Timestep SimulatorsDelay-dependent global asymptotic stability criteria for stochastic genetic regulatory networks with Markovian jumping parametersApproximation and inference methods for stochastic biochemical kinetics—a tutorial reviewSustained oscillations via coherence resonance in SIRQuasi-steady-state kinetics at enzyme and substrate concentrations in excess of the Michaelis-Menten constantStudying genetic regulatory networks at the molecular level: delayed reaction stochastic modelsPhantom bursting is highly sensitive to noise and unlikely to account for slow bursting in \(\beta\)-cells: considerations in favor of metabolically driven oscillationsEvolution of complex probability distributions in enzyme cascadesStochastic aspects of asymmetric autocatalysis and absolute asymmetric synthesisNovel techniques in parameter estimation for fractional dynamical models arising from biological systemsDeterministic and stochastic models of enzymatic networks-applications to pharmaceutical researchStochastic simulation of chemical reactions in spatially complex mediaMonte Carlo simulations of enzymatic reactions in crowded media. Effect of the enzyme-obstacle relative sizeSmoluchowski Reaction Kinetics for Reactions of Any OrderEffects of intrinsic and extrinsic noise can accelerate juxtacrine pattern formationFORMALISMS FOR SPECIFYING MARKOVIAN POPULATION MODELSChemical master equation and Langevin regimes for a gene transcription modelApproximation of event probabilities in noisy cellular processesThe sorting direct method for stochastic simulation of biochemical systems with varying reaction execution behaviorDelay-probability-distribution-dependent stability of uncertain stochastic genetic regulatory networks with mixed time-varying delays: an LMI approachSingle-variable reaction systems: Deterministic and stochastic modelsDiscrete-time stochastic modeling and simulation of biochemical networksFormalisms for Specifying Markovian Population ModelsRobust stability of stochastic genetic regulatory networks with discrete and distributed delaysSize-independent differences between the mean of discrete stochastic systems and the corresponding continuous deterministic systemsModelling of Biochemical Reactions by Stochastic Automata NetworksApproximate analysis of biological systems by hybrid switching jump diffusionHunting $\varepsilon$: The Origin and Validity of Quasi-Steady-State Reductions in Enzyme KineticsStochastic modelling of PTEN regulation in brain tumors: a model for glioblastoma multiforme



Cites Work