scientific article; zbMATH DE number 5032848

From MaRDI portal
Revision as of 02:58, 7 March 2024 by Import240305080351 (talk | contribs) (Created automatically from import240305080351)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)

Publication:5474959

zbMath1141.92002MaRDI QIDQ5474959

Uri Alon

Publication date: 15 June 2006


Title: zbMATH Open Web Interface contents unavailable due to conflicting licenses.



Related Items (only showing first 100 items - show all)

Analysis of a Reduced Model of Epithelial–Mesenchymal Fate Determination in Cancer Metastasis as a Singularly-Perturbed Monotone SystemInformation restriction in two-step cascade: role of fidelity and fluctuationsModeling and Analysis of Gene Regulatory NetworksRigorous computational dynamics in the context of unknown nonlinearitiesVector-Valued Optimal Mass TransportExternal field and critical exponents in controlling dynamics on complex networksGraphical characterizations of robust stability in biological interaction networksEfficient exponential methods for genetic regulatory systemsProcess calculi for biological processesExtended lasso-type MARS (LMARS) model in the description of biological networkAnalytical results for the distribution of shortest path lengths in directed random networks that grow by node duplicationDesign Issues for Qualitative Modelling of Biological Cells with Petri NetsFirst passage times and minimum actions for a stochastic minimal bistable systemA novel multiscale framework for delineating cancer evolution from subclonal compositionsApplied mathematics and nonlinear sciences in the war on cancerSelf‐regulation in a stochastic model of chemical self‐replicationA novel dimension reduction method with information entropy to evaluate network resilienceGlobal dynamics of modified discrete Lotka-Volterra modelTrajectory Control in Nonlinear Networked Systems and Its Applications to Complex Biological SystemsMicrodomain [Ca2+ Fluctuations Alter Temporal Dynamics in Models of Ca2+-Dependent Signaling Cascades and Synaptic Vesicle Release] ⋮ THE EFFECT OF TIME SCALE DIFFERENCES AND TIME DELAYS ON THE STRUCTURAL STABILITY OF OSCILLATIONS IN A TWO-GENE NETWORKAnalytical results for the in-degree and out-degree distributions of directed random networks that grow by node duplicationThe “Power Network” of Genetic CircuitsStabilizing and Destabilizing Effects of Embedding 3-Node Subgraphs on the State Space of Boolean NetworksEstimation of Parameter Sensitivities for Stochastic Reaction Networks Using Tau-Leap SimulationsCOMPLEX DYNAMICAL ANALYSIS OF A COUPLED NETWORK FROM INNATE IMMUNE RESPONSESEvent-Driven Metamorphoses of P SystemsA stochastic switch with different phasesOn the Stability of Network Indices Defined by Means of Matrix FunctionsHill Kinetics Meets P Systems: A Case Study on Gene Regulatory Networks as Computing Agents in silico and in vivoConnecting local and global sensitivities in a mathematical model for wound healingDynamic Integrative Synaptic Plasticity Explains the Spacing Effect in the Transition from Short- to Long-Term MemoryModeling and Designing Real–World NetworksBarycentric Algebras and Gene ExpressionStability and Bifurcation Analysis of Cyclic Genetic Regulatory Networks with Mixed Time DelaysRECURRING HARMONIC WALKS AND NETWORK MOTIFS IN WESTERN MUSICNambu Bracket Formulation of Nonlinear Biochemical Reactions Beyond Elementary Mass Action KineticsData-driven mathematical modeling and quantitative analysis of cell dynamics in the tumor microenvironmentModels of transcription factor binding: sensitivity of activation functions to model assumptionsEmergence in solid state physics and biologyScale invariance analysis for genetic networks applying homogeneityMultistability and oscillations in genetic control of metabolismTrade-offs in delayed information transmission in biochemical networksFundamental limits to cellular sensingComputing the structural influence matrix for biological systemsComparing different ODE modelling approaches for gene regulatory networksSignal propagation in small-world biological networks with weak noiseMulticellular mathematical modelling of mesendoderm formation in amphibiansA critical study of network models for neural networks and their dynamicsComputational Identification of Irreducible State-Spaces for Stochastic Reaction NetworksThe coordination dynamics of mobile conjugate reinforcementNetwork resilienceThe influence of assortativity on the robustness and evolvability of gene regulatory networks upon gene birthA mathematical model of cortical bone remodeling at cellular level under mechanical stimulusAsymptotic dynamics of the Leslie-gower competition system with Allee effects and stockingType-dependent stochastic Ising model describing the dynamics of a non-symmetric feedback moduleA graph-based algorithm for the multi-objective optimization of gene regulatory networksTuring Pattern Formation from the Cooperation of Competition and Cross-DiffusionParametric study of control mechanism of cortical bone remodeling under mechanical stimulusStability and structural properties of gene regulation networks with coregulation rulesAn investigation of design principles underlying repulsive and attractive gradient sensing and their switchingStability analysis of a signaling circuit with dual species of gtpase switchesThe role of feedback mechanisms in biological network models-A tutorialRobust stability of delayed genetic regulatory networks with different sources of uncertaintiesPulse generation in the quorum machinery of \textit{Pseudomonas aeruginosa}Polyhedral Lyapunov functions structurally ensure global asymptotic stability of dynamical networks iff the Jacobian is non-singularA Computational Method for Robust Bifurcation Analysis and Its Application to Biomolecular SystemsThe dynamics of hybrid metabolic-genetic oscillatorsA process algebra framework for multi-scale modelling of biological systemsOn a mathematical model of tumor-immune system interactions with an oncolytic virus therapyCollective dynamics of genetic oscillators with cell-to-cell communication: a study case of signal integrationVertex results for the robust analysis of uncertain biochemical systemsMathematics of the genomeStability and bifurcation analysis of new coupled repressilators in genetic regulatory networks with delaysComputing weakly reversible deficiency zero network translations using elementary flux modesNegative feedback contributes to the stochastic expression of the interferon-\(\beta\) gene in virus-triggered type I interferon signaling pathwaysThe state observer as a tool for the estimation of gene expressionAnalysis of homeostatic mechanisms in biochemical networksFactorized time-dependent distributions for certain multiclass queueing networks and an application to enzymatic processing networksUsing optimal control theory to identify network structures that foster synchronyParameter estimation for gene regulatory networks from microarray data: cold shock response in \textit{Saccharomyces cerevisiae}Selecting against antibiotic-resistant pathogens: optimal treatments in the presence of commensal bacteriaWave pinning and spatial patterning in a mathematical model of antivin/lefty-nodal signallingIndependent channels for miRNA biosynthesis ensure efficient static and dynamic control in the regulation of the early stages of myogenesisSearchability of central nodes in networksConsensus and disturbance attenuation in multi‐agent chains with nonlinear control and time delaysEquilibria and stability of a class of positive feedback loops. Mathematical analysis and its application to caspase-dependent apoptosisInfluence of non-Gaussian noise on the coherent feed-forward loop with time delayAnalysis of a genetic-metabolic oscillator with piecewise linear modelsStochastic resonance in neuronal network motifs with Ornstein-Uhlenbeck colored noisePiecewise-linear Lyapunov functions for structural stability of biochemical networksAssigning probabilities to qualitative dynamics of gene regulatory networksTemperature robustness in \textit{Arabidopsis} circadian clock models is facilitated by repressive interactions, autoregulation, and three-node feedbacksDerivation, identification and validation of a computational model of a novel synthetic regulatory network in yeastSwitching neuronal state: optimal stimuli revealed using a stochastically-seeded gradient algorithmThe effect of scale-free topology on the robustness and evolvability of genetic regulatory networksToward model selection by formal methodsExistence criteria of periodic oscillations in cyclic gene regulatory networksA structural classification of candidate oscillatory and multistationary biochemical systemsExponential equilibration of genetic circuits using entropy methods







This page was built for publication: