methylKit

MaRDI QIDQ35252swMATHFDO

Official website https://bioconductor.org/packages/release/bioc/html/methylKit.html

Cited in

(30)

• HMM-Fisher: identifying differential methylation using a hidden Markov model and Fisher's exact test
• HMM-DM: identifying differentially methylated regions using a hidden Markov model
• MethCP: differentially methylated region detection with change point models
• HiTEC
• SolexaQA
• BEAT
• WGBSSuite
• BS Seeker
• BSmooth
• Bismark
• BISMA
• Bisulfighter
• COHCAP
• DMAP
• HMM-DM
• Minfi
• MethylSig
• MOABS
• PASS-bis
• RRBSMAP
• SAAP-RRBS
• IMA
• TileQC
• HMM-Fisher
• MethCP
• metilene
• methyAnalysis
• MethylCoder
• Comparing five statistical methods of differential methylation identification using bisulfite sequencing data
• Computational genomics with R. With the assistance of Verdan Franke, Bora Uyar and Jonathan Ronen

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