Identifiability of the unrooted species tree topology under the coalescent model with time-reversible substitution processes, site-specific rate variation, and invariable sites

DOI10.1016/j.jtbi.2015.03.006zbMath1341.92047arXiv1406.4811OpenAlexW2046132104WikidataQ41191336 ScholiaQ41191336MaRDI QIDQ2630306

Julia Chifman, Laura S. Kubatko

Publication date: 27 July 2016

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1406.4811

zbMATH Keywords

identifiabilityphylogeneticsalgebraic statistics

Mathematics Subject Classification ID

Problems related to evolution (92D15) Taxonomy, cladistics, statistics in mathematical biology (92B10) Genetics and epigenetics (92D10)

Related Items (14)

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Cites Work

• Identifying the rooted species tree from the distribution of unrooted gene trees under the coalescent
• Line-of-descent and genealogical processes, and their applications in population genetics models
• The coalescent
• Construction of linear invariants in phylogenetic inference
• Determining species tree topologies from clade probabilities under the coalescent
• Identifying evolutionary trees and substitution parameters for the general Markov model with invariable sites
• Tree Construction using Singular Value Decomposition
• Identifiability of a Markovian model of molecular evolution with gamma-distributed rates
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