CE-PLoc: An ensemble classifier for predicting protein subcellular locations by fusing different modes of pseudo amino acid composition

DOI10.1016/J.COMPBIOLCHEM.2011.05.003zbMath1226.92020DBLPjournals/candc/KhanMH11OpenAlexW2076974281WikidataQ51537796 ScholiaQ51537796MaRDI QIDQ647294

Asifullah Khan, Maqsood Hayat, Abdul Majid

Publication date: 22 November 2011

Published in: Computational Biology and Chemistry (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.compbiolchem.2011.05.003

zbMATH Keywords

dipeptide composition

Mathematics Subject Classification ID

Probabilistic models, generic numerical methods in probability and statistics (65C20) Biochemistry, molecular biology (92C40) Cell biology (92C37) Computational methods for problems pertaining to biology (92-08)

Related Items (2)

Protein subcellular localization in human and hamster cell lines: employing local ternary patterns of fluorescence microscopy images ⋮ MemHyb: predicting membrane protein types by hybridizing SAAC and PSSM

Uses Software

• LIBSVM
• Cell-PLoc
• GPCR-2L
• Euk-PLoc
• iLoc-Euk
• Plant-mPLoc
• AFP-Pred
• Gneg-mPLoc
• Euk-mPLoc
• Hum-PLoc
• EnsemblePail

Cites Work

• Unnamed Item
• Prediction of protein subcellular location using hydrophobic patterns of amino acid sequence
• Measures of diversity in classifier ensembles and their relationship with the ensemble accuracy
• A novel representation for apoptosis protein subcellular localization prediction using support vector machine
• Multiclass cancer classification by support vector machines with class-wise optimized genes and probability estimates
• SubChlo: predicting protein subchloroplast locations with pseudo-amino acid composition and the evidence-theoretic \(K\)-nearest neighbor (ET-KNN) algorithm
• A novel feature representation method based on Chou's pseudo amino acid composition for protein structural class prediction
• A protein fold classifier formed by fusing different modes of pseudo amino acid composition via PSSM
• Predicting membrane protein types by fusing composite protein sequence features into pseudo amino acid composition
• Some remarks on protein attribute prediction and pseudo amino acid composition
• Lysine acetylation sites prediction using an ensemble of support vector machine classifiers
• Gneg-mPLoc: a top-down strategy to enhance the quality of predicting subcellular localization of Gram-negative bacterial proteins
• Prediction protein structural classes with pseudo-amino acid composition: approximate entropy and hydrophobicity pattern
• The modified Mahalanobis discriminant for predicting outer membrane proteins by using Chou's pseudo amino acid composition
• An ensemble of models of the acute inflammatory response to bacterial lipopolysaccharide in rats: results from parameter space reduction
• Predicting \(O\)-glycosylation sites in mammalian proteins by using SVMs
• Combination of support vector machines using genetic programming

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