Chaste
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Source code repository: https://github.com/Chaste/Chaste
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Related Items (53)
Impact of force function formulations on the numerical simulation of centre-based models ⋮ The significant effect of the choice of ionic current integration method in cardiac electro-physiological simulations ⋮ A theoretical investigation of the effect of proliferation and adhesion on monoclonal conversion in the colonic crypt ⋮ The study of the influence of heart ventricular wall thickness on pseudo-ECG ⋮ An efficient isogeometric collocation approach to cardiac electrophysiology ⋮ A review of spatial computational models for multi-cellular systems, with regard to intestinal crypts and colorectal cancer development ⋮ The formation of tight tumor clusters affects the efficacy of cell cycle inhibitors: a hybrid model study ⋮ BioFVM-X: an MPI+OpenMP 3-D simulator for biological systems ⋮ Three-dimensional spatiotemporal modeling of colon cancer organoids reveals that multimodal control of stem cell self-renewal is a critical determinant of size and shape in early stages of tumor growth ⋮ Approximate Bayesian computation reveals the importance of repeated measurements for parameterising cell-based models of growing tissues ⋮ Efficient simulation of cardiac electrical propagation using high-order finite elements. II: Adaptive \(p\)-version ⋮ Approaches for the estimation of timescales in nonlinear dynamical systems: timescale separation in enzyme kinetics as a case study ⋮ A kinetic model to study the regulation of \(\beta \)-catenin, APC, and axin in the human colonic crypt ⋮ Lattice Boltzmann method for parallel simulations of cardiac electrophysiology using GPUs ⋮ Extending BACOLI to Solve the Monodomain Model ⋮ Operator splitting for the bidomain model revisited ⋮ Efficient simulation of cardiac electrical propagation using high order finite elements ⋮ Stability analysis of the POD reduced order method for solving the bidomain model in cardiac electrophysiology ⋮ Numerical Analysis of the Immersed Boundary Method for Cell-Based Simulation ⋮ Very high order finite volume methods for cardiac electrophysiology ⋮ High-Order Operator Splitting for the Bidomain and Monodomain Models ⋮ Buckling of a growing tissue and the emergence of two-dimensional patterns ⋮ A hybrid approach to multi-scale modelling of cancer ⋮ Targeting cellular DNA damage responses in cancer: an in vitro-calibrated agent-based model simulating monolayer and spheroid treatment responses to ATR-inhibiting drugs ⋮ On the identification of multiple space dependent ionic parameters in cardiac electrophysiology modelling ⋮ Time domain spectral element-based wave finite element method for periodic structures ⋮ Computational and Numerical Methods for the Efficient and Accurate Solution of the Bidomain Equations ⋮ A multicellular model of intestinal crypt buckling and fission ⋮ Simulation of cardiac electrophysiology on next-generation high-performance computers ⋮ Non-conforming finite-element formulation for cardiac electrophysiology: an effective approach to reduce the computation time of heart simulations without compromising accuracy ⋮ Multi-scale modeling of APC and \(\beta \)-catenin regulation in the human colonic crypt ⋮ Induced drift of scroll waves in the Aliev-Panfilov model and in an axisymmetric heart left ventricle ⋮ A 3D multiscale model to explore the role of EGFR overexpression in tumourigenesis ⋮ Homogenization Model for Aberrant Crypt Foci ⋮ Chaste: A test-driven approach to software development for biological modelling ⋮ A comparison of fourth-order operator splitting methods for cardiac simulations ⋮ Modelling the role of the basement membrane beneath a growing epithelial monolayer ⋮ Mathematical modeling of monoclonal conversion in the colonic crypt ⋮ Multispecies model of cell lineages and feedback control in solid tumors ⋮ Numerical solution of the localized inverse problem of electrocardiography ⋮ Numerical Simulations for Cardiac Electrophysiology Problems ⋮ Multiphysics Computational Modeling in $\boldsymbol{\mathcal{C}}\mathbf{Heart}$ ⋮ Maintaining the proliferative cell niche in multicellular models of epithelia ⋮ Models, measurement and inference in epithelial tissue dynamics ⋮ Modelling cellular interactions and dynamics during kidney morphogenesis ⋮ Integrated heart -- coupling multiscale and multiphysics models for the simulation of the cardiac function ⋮ Direct Function Evaluation versus Lookup Tables: When to Use Which? ⋮ Automated Adjoints of Coupled PDE-ODE Systems ⋮ Derivation of continuum models from discrete models of mechanical forces in cell populations ⋮ A diffuse interface framework for modeling the evolution of multi-cell aggregates as a soft packing problem driven by the growth and division of cells ⋮ Cell cycle regulation of oscillations yields coupling of growth and form in a computational model of the presomitic mesoderm ⋮ Modelling realistic 3D deformations of simple epithelia in dynamic homeostasis ⋮ Application of stochastic phenomenological modelling to cell-to-cell and beat-to-beat electrophysiological variability in cardiac tissue
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