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Related Items (39)

On topological indices for small RNA graphsThe ambush hypothesis at the whole-organism level: off frame, `hidden' stops in vertebrate mitochondrial genes increase developmental stabilityDynamic extended folding: modeling the RNA secondary structures during co-transcriptional foldingHBV-encoded microRNA candidate and its targetLarge deviations for random trees and the branching of RNA secondary structuresRNA secondary structures in a polymer-zeta model how foldings should be shaped for sparsification to establish a linear speedupOn the Structure of RNA Branching PolytopesRegulatory Signals in Genomic SequencesComputational identification of microRNAs and their targetsRNA secondary structures with given motif specification: combinatorics and algorithmsSystematic discovery of the grammar of translational inhibition by RNA hairpinsPossible multiple origins of replication in primate mitochondria: alternative role of tRNA sequencesSymmetric time warping, Boltzmann pair probabilities and functional genomicsCombinatorics of locally optimal RNA secondary structuresInformation-theoretic uncertainty of SCFG-modeled folding space of the non-coding RNAExpected distance between terminal nucleotides of RNA secondary structuresAsymptotic number of hairpins of saturated RNA secondary structuresUnified approach to partition functions of RNA secondary structuresIntroduction to special issue on RNAComputational methods in noncoding RNA researchBoltzmann ensemble features of RNA secondary structures: a comparative analysis of biological RNA sequences and random shufflesA fuzzy model of predicting RNA secondary structureSparse RNA folding: time and space efficient algorithmsOn the page number of RNA secondary structures with pseudoknotsParametric analysis of RNA branching configurationsRNA bioinformaticsImportance of RNA secondary structure information for yeast donor and acceptor splice site predictions by neural networksCofolga: a genetic algorithm for finding the common folding of two RNAsThe end-to-end distance of RNA as a randomly self-paired polymerRuleset optimization on isomorphic oritatami systemsOverlapping genes coded in the 3'-to-5'-direction in mitochondrial genes and 3'-to-5' polymerization of non-complementary RNA by an `invertase'On conflict free DNA codesIn silico analysis of EST and genomic sequences allowed the prediction of cis-regulatory elements for Entamoeba histolytica mRNA polyadenylationDetecting conserved secondary structures in RNA molecules using constrained structural alignmentComputational identification of novel microRNA homologs in the chimpanzee genomeComputational identification of 48 potato microRNAs and their targetsA grammatical approach to RNA-RNA interaction predictionSparse RNA Folding: Time and Space Efficient AlgorithmsNondeterministic Seedless Oritatami Systems and Hardness of Testing Their Equivalence


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