Chaste
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Software:12891
swMATH122MaRDI QIDQ12891FDOQ12891
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Official website: http://www.cs.ox.ac.uk/chaste/
Source code repository: https://github.com/Chaste/Chaste
Cited In (92)
- Cell cycle regulation of oscillations yields coupling of growth and form in a computational model of the presomitic mesoderm
- Homogenization Model for Aberrant Crypt Foci
- Targeting cellular DNA damage responses in cancer: an in vitro-calibrated agent-based model simulating monolayer and spheroid treatment responses to ATR-inhibiting drugs
- A diffuse interface framework for modeling the evolution of multi-cell aggregates as a soft packing problem driven by the growth and division of cells
- Time domain spectral element-based wave finite element method for periodic structures
- Extending BACOLI to solve the monodomain model
- On the identification of multiple space dependent ionic parameters in cardiac electrophysiology modelling
- Numerical analysis of the immersed boundary method for cell-based simulation
- High-order operator splitting for the bidomain and monodomain models
- OpenCOR
- A comparison of fourth-order operator splitting methods for cardiac simulations
- pflamelet
- GEMS
- Automated adjoints of coupled PDE-ODE systems
- Modelling realistic 3D deformations of simple epithelia in dynamic homeostasis
- HyperHDG
- Non-conforming finite-element formulation for cardiac electrophysiology: an effective approach to reduce the computation time of heart simulations without compromising accuracy
- The significant effect of the choice of ionic current integration method in cardiac electro-physiological simulations
- Impact of force function formulations on the numerical simulation of centre-based models
- Simulation of cardiac electrophysiology on next-generation high-performance computers
- Buckling of a growing tissue and the emergence of two-dimensional patterns
- A 3D multiscale model to explore the role of EGFR overexpression in tumourigenesis
- Induced drift of scroll waves in the Aliev-Panfilov model and in an axisymmetric heart left ventricle
- HAL
- A multicellular model of intestinal crypt buckling and fission
- Multi-scale modeling of APC and \(\beta \)-catenin regulation in the human colonic crypt
- Application of stochastic phenomenological modelling to cell-to-cell and beat-to-beat electrophysiological variability in cardiac tissue
- A theoretical investigation of the effect of proliferation and adhesion on monoclonal conversion in the colonic crypt
- The study of the influence of heart ventricular wall thickness on pseudo-ECG
- Numerical solution of the localized inverse problem of electrocardiography
- Maintaining the proliferative cell niche in multicellular models of epithelia
- Chaste: A test-driven approach to software development for biological modelling
- Multiphysics computational modeling in \(\mathcal{C}\mathbf{Heart}\)
- Approaches for the estimation of timescales in nonlinear dynamical systems: timescale separation in enzyme kinetics as a case study
- Three-dimensional spatiotemporal modeling of colon cancer organoids reveals that multimodal control of stem cell self-renewal is a critical determinant of size and shape in early stages of tumor growth
- Approximate Bayesian computation reveals the importance of repeated measurements for parameterising cell-based models of growing tissues
- A kinetic model to study the regulation of \(\beta \)-catenin, APC, and axin in the human colonic crypt
- An efficient isogeometric collocation approach to cardiac electrophysiology
- Lattice Boltzmann method for parallel simulations of cardiac electrophysiology using GPUs
- Models, measurement and inference in epithelial tissue dynamics
- CellML
- MCELL
- Global Arrays
- parest_dae
- PERMIX
- OpenCMISS
- CSIM
- Integrated heart -- coupling multiscale and multiphysics models for the simulation of the cardiac function
- LBM-EP
- Beatbox
- Spline Toolbox
- Computational and numerical methods for the efficient and accurate solution of the bidomain equations
- Operator splitting for the bidomain model revisited
- Seg3D
- LBIBCell
- JSim
- Ani3D
- Nutils
- VirtualLeaf
- FunC
- PyCml
- VCell
- PhysiCell
- CompuCell3D
- Morpheus
- CellAnimation
- cPath
- SBRML
- Direct Function Evaluation versus Lookup Tables: When to Use Which?
- Stability analysis of the POD reduced order method for solving the bidomain model in cardiac electrophysiology
- Mathematical modeling of monoclonal conversion in the colonic crypt
- Modelling the role of the basement membrane beneath a growing epithelial monolayer
- CellSys
- Biocellion
- Boids
- EmbryoMaker
- Microvessel Chaste
- cbcbeat
- Modelling cellular interactions and dynamics during kidney morphogenesis
- Multispecies model of cell lineages and feedback control in solid tumors
- Efficient simulation of cardiac electrical propagation using high-order finite elements. II: Adaptive \(p\)-version
- Efficient simulation of cardiac electrical propagation using high order finite elements
- Derivation of continuum models from discrete models of mechanical forces in cell populations
- Numerical Simulations for Cardiac Electrophysiology Problems
- OpenCarp
- BioFVM
- BioFVM-X
- A review of spatial computational models for multi-cellular systems, with regard to intestinal crypts and colorectal cancer development
- The formation of tight tumor clusters affects the efficacy of cell cycle inhibitors: a hybrid model study
- A hybrid approach to multi-scale modelling of cancer
- BioFVM-X: an MPI+OpenMP 3-D simulator for biological systems
- Very high order finite volume methods for cardiac electrophysiology
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