BioModels
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Software:25524
swMATH13610MaRDI QIDQ25524FDOQ25524
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Official website: http://www.ebi.ac.uk/biomodels-main/
Cited In (50)
- Coping with dynamical reaction system topologies using deterministic P modules: a case study of photosynthesis
- Bio-PEPA: A framework for the modelling and analysis of biological systems
- Probabilistic approximations of ODEs based bio-pathway dynamics
- An extension of ERODE to reduce Boolean networks by backward Boolean equivalence
- On enumerating minimal siphons in Petri nets using CLP and SAT solvers: theoretical and practical complexity
- PoCaB: A Software Infrastructure to Explore Algebraic Methods for Bio-chemical Reaction Networks
- MapleBinomials
- The \textsc{SDEval} benchmarking toolkit
- Robust modelling, measurement and analysis of human and animal metabolic systems
- Symbolic versus numerical computation and visualization of parameter regions for multistationarity of biological networks
- Analysis of reaction network systems using tropical geometry
- A case study on the parametric occurrence of multiple steady states
- Algorithmic reduction of biological networks with multiple time scales
- Modelling biological compartments in bio-PEPA
- Model-based selection of the robust JAK-STAT activation mechanism
- A geometric method for model reduction of biochemical networks with polynomial rate functions
- Dynamical properties of discrete reaction networks
- A geometric approach for analyzing parametric biological systems by exploiting block triangular structure
- Generalizing Gillespie's direct method to enable network-free simulations
- Bio-PEPA with Events
- Computational challenges in systems biology
- Ginsim
- Metatool
- PySB
- SakerGrid
- SBMLsimulator
- SloppyCell
- CoNtRol
- A comparative analysis of kinetic models of erythrocyte glycolysis
- The markup is the model: reasoning about systems biology models in the semantic web era
- NFsim
- MetaFork
- ConvAn
- Design space toolbox
- STOCHSIM
- CompuCell3D
- Dizzy
- SBRML
- GNA
- Systems Biology: The Next Frontier for Bioinformatics
- Inferring reaction systems from ordinary differential equations
- Aeon
- A systems biology approach to understanding alcoholic liver disease molecular mechanism: the development of static and dynamic models
- A review of spatial computational models for multi-cellular systems, with regard to intestinal crypts and colorectal cancer development
- SBML to bond graphs: from conversion to composition
- Misinterpretation risks of global stochastic optimisation of kinetic models revealed by multiple optimisation runs
- Dynamic publication media with the COPASI R connector (CoRC)
- Smooth functional tempering for nonlinear differential equation models
- Glycolysis in saccharomyces cerevisiae: algorithmic exploration of robustness and origin of oscillations
- A computational approach to extinction events in chemical reaction networks with discrete state spaces
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