BioModels

swMATH13610MaRDI QIDQ25524FDOQ25524

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Cited In (32)

• A Geometric Approach for Analyzing Parametric Biological Systems by Exploiting Block Triangular Structure
• Coping with dynamical reaction system topologies using deterministic P modules: a case study of photosynthesis
• Bio-PEPA: A framework for the modelling and analysis of biological systems
• Probabilistic approximations of ODEs based bio-pathway dynamics
• An extension of ERODE to reduce Boolean networks by backward Boolean equivalence
• On enumerating minimal siphons in Petri nets using CLP and SAT solvers: theoretical and practical complexity
• PoCaB: A Software Infrastructure to Explore Algebraic Methods for Bio-chemical Reaction Networks
• Robust modelling, measurement and analysis of human and animal metabolic systems
• Symbolic versus numerical computation and visualization of parameter regions for multistationarity of biological networks
• Algorithmic reduction of biological networks with multiple time scales
• Model-based selection of the robust JAK-STAT activation mechanism
• A geometric method for model reduction of biochemical networks with polynomial rate functions
• Dynamical properties of discrete reaction networks
• Generalizing Gillespie's direct method to enable network-free simulations
• Bio-PEPA with Events
• Computational challenges in systems biology
• A comparative analysis of kinetic models of erythrocyte glycolysis
• The markup is the model: reasoning about systems biology models in the semantic web era
• Analysis of Reaction Network Systems Using Tropical Geometry
• Systems Biology: The Next Frontier for Bioinformatics
• Inferring reaction systems from ordinary differential equations
• A systems biology approach to understanding alcoholic liver disease molecular mechanism: the development of static and dynamic models
• The SDEval benchmarking toolkit
• A review of spatial computational models for multi-cellular systems, with regard to intestinal crypts and colorectal cancer development
• SBML to bond graphs: from conversion to composition
• A Case Study on the Parametric Occurrence of Multiple Steady States
• Misinterpretation risks of global stochastic optimisation of kinetic models revealed by multiple optimisation runs
• Dynamic publication media with the COPASI R connector (CoRC)
• Smooth functional tempering for nonlinear differential equation models
• Glycolysis in saccharomyces cerevisiae: algorithmic exploration of robustness and origin of oscillations
• A computational approach to extinction events in chemical reaction networks with discrete state spaces
• Modelling Biological Compartments in Bio-PEPA

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