Translated chemical reaction networks

DOI10.1007/s11538-014-9947-5zbMath1297.92096arXiv1305.5845OpenAlexW3100811169WikidataQ51103659 ScholiaQ51103659MaRDI QIDQ458720

Matthew D. Johnston

Publication date: 8 October 2014

Published in: Bulletin of Mathematical Biology (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1305.5845

zbMATH Keywords

chemical kineticssteady statecomplex balancingmass action systemweakly reversible

Mathematics Subject Classification ID

Classical flows, reactions, etc. in chemistry (92E20) Biochemistry, molecular biology (92C40)

Related Items (30)

Absolutely Complex Balanced Kinetic Systems ⋮ Absolute concentration robustness in networks with low-dimensional stoichiometric subspace ⋮ An all-encompassing global convergence result for processive multisite phosphorylation systems ⋮ Joining and decomposing reaction networks ⋮ A deficiency-based approach to parametrizing positive equilibria of biochemical reaction systems ⋮ Multistationarity in structured reaction networks ⋮ Computing weakly reversible deficiency zero network translations using elementary flux modes ⋮ Emergence of oscillations in a mixed-mechanism phosphorylation system ⋮ A computational approach to steady state correspondence of regular and generalized mass action systems ⋮ A network-based parametrization of positive steady states of power-law kinetic systems ⋮ Computational Translation Framework Identifies Biochemical Reaction Networks with Special Topologies and Their Long-Term Dynamics ⋮ An Algorithm for Finding Weakly Reversible Deficiency Zero Realizations of Polynomial Dynamical Systems ⋮ Chemical reaction network approaches to biochemical systems theory ⋮ The Disguised Toric Locus and Affine Equivalence of Reaction Networks ⋮ Sufficient Conditions for Linear Stability of Complex-Balanced Equilibria in Generalized Mass-Action Systems ⋮ On classes of reaction networks and their associated polynomial dynamical systems ⋮ Detailed balance \(=\) complex balance \(+\) cycle balance: a graph-theoretic proof for reaction networks and Markov chains ⋮ A computational approach to persistence, permanence, and endotacticity of biochemical reaction systems ⋮ Squeezing stationary distributions of stochastic chemical reaction systems ⋮ Positive equilibria of weakly reversible power law kinetic systems with linear independent interactions ⋮ Conditions for extinction events in chemical reaction networks with discrete state spaces ⋮ Network translation and steady-state properties of chemical reaction systems ⋮ An Efficient Characterization of Complex-Balanced, Detailed-Balanced, and Weakly Reversible Systems ⋮ A generalization of Birch's theorem and vertex-balanced steady states for generalized mass-action systems ⋮ Linear conjugacy of chemical kinetic systems ⋮ Detecting binomiality ⋮ Single-target networks ⋮ On the Bijectivity of Families of Exponential/Generalized Polynomial Maps ⋮ Analysis of mass-action systems by split network translation ⋮ A global convergence result for processive multisite phosphorylation systems

Cites Work

• Chemical reaction systems with toric steady states
• Multistationarity in mass action networks with applications to ERK activation
• How far is complex balancing from detailed balancing?
• Smallest chemical reaction system with Hopf bifurcation
• Toric dynamical systems
• On the number of steady states in a multiple futile cycle
• Mathematical analysis of the smallest chemical reaction system with Hopf bifurcation
• A family of sparse polynomial systems arising in chemical reaction systems
• Bernstein's second theorem and Viro's method for sparse polynomial systems in chemistry
• The existence and uniqueness of steady states for a class of chemical reaction networks
• Multiple steady states for chemical reaction networks of deficiency one
• Concordant chemical reaction networks
• Multistationarity in sequential distributed multisite phosphorylation networks
• Translation-invariant monotone systems, and a global convergence result for enzymatic futile cycles
• Multistationarity in the activation of a MAPK: parametrizing the relevant region in parameter space
• A Petri net approach to the study of persistence in chemical reaction networks
• Generalized Mass Action Systems: Complex Balancing Equilibria and Sign Vectors of the Stoichiometric and Kinetic-Order Subspaces
• Multiple Equilibria in Complex Chemical Reaction Networks: I. The Injectivity Property
• Multiple Equilibria in Complex Chemical Reaction Networks: II. The Species-Reaction Graph
• Sign conditions for injectivity of generalized polynomial maps with applications to chemical reaction networks and real algebraic geometry
• Unnamed Item
• Unnamed Item
• Unnamed Item
• Unnamed Item
• Unnamed Item

This page was built for publication: Translated chemical reaction networks