A novel feature representation method based on Chou's pseudo amino acid composition for protein structural class prediction
From MaRDI portal
Publication:1631276
DOI10.1016/J.COMPBIOLCHEM.2010.09.002zbMath1403.92221DBLPjournals/candc/SahuP10OpenAlexW2089989707WikidataQ34151702 ScholiaQ34151702MaRDI QIDQ1631276
Ganapati Panda, Sitanshu Sekhar Sahu
Publication date: 6 December 2018
Published in: Computational Biology and Chemistry (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1016/j.compbiolchem.2010.09.002
Applications of statistics to biology and medical sciences; meta analysis (62P10) Protein sequences, DNA sequences (92D20)
Related Items (29)
Predicting plant protein subcellular multi-localization by Chou's PseAAC formulation based multi-label homolog knowledge transfer learning ⋮ Efficacy of function specific 3D-motifs in enzyme classification according to their EC-numbers ⋮ iCDI-PseFpt: identify the channel-drug interaction in cellular networking with PseAAC and molecular fingerprints ⋮ Protein subcellular localization in human and hamster cell lines: employing local ternary patterns of fluorescence microscopy images ⋮ A QSPR-like model for multilocus genotype networks of \textit{Fasciola hepatica} in Northwest Spain ⋮ Robust feature generation for protein subchloroplast location prediction with a weighted GO transfer model ⋮ A protein structural classes prediction method based on PSI-BLAST profile ⋮ Using protein granularity to extract the protein sequence features ⋮ Classify vertebrate hemoglobin proteins by incorporating the evolutionary information into the general PseAAC with the hybrid approach ⋮ Naïve Bayes classifier with feature selection to identify phage virion proteins ⋮ Protein fold recognition by alignment of amino acid residues using kernelized dynamic time warping ⋮ Chou's pseudo amino acid composition improves sequence-based antifreeze protein prediction ⋮ Constructing a linear QSAR for some metabolizable drugs by human or pig flavin-containing monooxygenases using some molecular features selected by a genetic algorithm trained SVM ⋮ Neural network and SVM classifiers accurately predict lipid binding proteins, irrespective of sequence homology ⋮ pLoc\_bal-mGneg: predict subcellular localization of Gram-negative bacterial proteins by quasi-balancing training dataset and general PseAAC ⋮ Predicting structural classes of proteins by incorporating their global and local physicochemical and conformational properties into general Chou's PseAAC ⋮ CE-PLoc: An ensemble classifier for predicting protein subcellular locations by fusing different modes of pseudo amino acid composition ⋮ Characterization of structure-antioxidant activity relationship of peptides in free radical systems using QSAR models: key sequence positions and their amino acid properties ⋮ A novel statistical measure for sequence comparison on the basis of \(k\)-word counts ⋮ Protein space: a natural method for realizing the nature of protein universe ⋮ A feature extraction technique using bi-gram probabilities of position specific scoring matrix for protein fold recognition ⋮ iPPI-PseAAC(CGR): identify protein-protein interactions by incorporating chaos game representation into PseAAC ⋮ Identifying anticancer peptides by using a generalized chaos game representation ⋮ Multi-kernel transfer learning based on Chou's PseAAC formulation for protein submitochondria localization ⋮ Prediction of GABA\(_{\mathrm A}\) receptor proteins using the concept of Chou's pseudo-amino acid composition and support vector machine ⋮ \textbf{iLoc-Virus}: a multi-label learning classifier for identifying the subcellular localization of virus proteins with both single and multiple sites ⋮ Predicting protein subchloroplast locations with both single and multiple sites via three different modes of Chou's pseudo amino acid compositions ⋮ Phogly-PseAAC: prediction of lysine phosphoglycerylation in proteins incorporating with position-specific propensity ⋮ R3P-Loc: a compact multi-label predictor using ridge regression and random projection for protein subcellular localization
Uses Software
Cites Work
- Variable predictive model based classification algorithm for effective separation of protein structural classes
- Using the augmented Chou's pseudo amino acid composition for predicting protein submitochondria locations based on auto covariance approach
- Using the concept of Chou's pseudo amino acid composition for risk type prediction of human papillomaviruses
- Prediction protein structural classes with pseudo-amino acid composition: approximate entropy and hydrophobicity pattern
- The modified Mahalanobis discriminant for predicting outer membrane proteins by using Chou's pseudo amino acid composition
- Using LogitBoost classifier to predict protein structural classes
- Using Chou's amphiphilic pseudo-amino acid composition and support vector machine for prediction of enzyme subfamily classes
- Discrete Cosine Transform
This page was built for publication: A novel feature representation method based on Chou's pseudo amino acid composition for protein structural class prediction
