Sign conditions for injectivity of generalized polynomial maps with applications to chemical reaction networks and real algebraic geometry

DOI10.1007/S10208-014-9239-3zbMath1382.92272arXiv1311.5493OpenAlexW2043653908WikidataQ122417795 ScholiaQ122417795MaRDI QIDQ5963080

Anne Shiu, Alicia Dickenstein, Elisenda Feliu, Georg Regensburger, Stefan Müller, Carsten Conradi

Publication date: 4 March 2016

Published in: Foundations of Computational Mathematics (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1311.5493

zbMATH Keywords

oriented matroidDescartes' rule of signspower-law kineticsrestricted injectivitysign vector

Mathematics Subject Classification ID

Classical flows, reactions, etc. in chemistry (92E20) Nonlinear ordinary differential equations and systems (34A34) Dynamics induced by flows and semiflows (37C10) Chemical kinetics in thermodynamics and heat transfer (80A30) Oriented matroids in discrete geometry (52C40)

Related Items (56)

The steady-state degree and mixed volume of a chemical reaction network ⋮ Algebraic Perspectives on Signomial Optimization ⋮ Some consequences of thermodynamic feasibility for chemical reaction networks. Considering thermodynamic feasibility in current CRN research ⋮ Parametric toricity of steady state varieties of reaction networks ⋮ Multistationarity in cyclic sequestration-transmutation networks ⋮ Defective dual varieties for real spectra ⋮ Geometric conditions for injectivity of 3D Bézier volumes ⋮ Software for the Gale transform of fewnomial systems and a Descartes rule for fewnomials ⋮ Critical parameters for singular perturbation reductions of chemical reaction networks ⋮ On generalizing Descartes' rule of signs to hypersurfaces ⋮ Coloured noise from stochastic inflows in reaction-diffusion systems ⋮ A deficiency-based approach to parametrizing positive equilibria of biochemical reaction systems ⋮ Multistationarity in structured reaction networks ⋮ Computing weakly reversible deficiency zero network translations using elementary flux modes ⋮ Emergence of oscillations in a mixed-mechanism phosphorylation system ⋮ A computational approach to steady state correspondence of regular and generalized mass action systems ⋮ Local and global robustness at steady state ⋮ Kac-Rice formulas and the number of solutions of parametrized systems of polynomial equations ⋮ Tikhonov-Fenichel reduction for parameterized critical manifolds with applications to chemical reaction networks ⋮ An improved algorithm for checking the injectivity of 2D toric surface patches ⋮ Gröbner bases of reaction networks with intermediate species ⋮ A new decomposition of the graph Laplacian and the binomial structure of mass-action systems ⋮ Newton-Okounkov bodies of chemical reaction systems ⋮ Sublinear circuits and the constrained signomial nonnegativity problem ⋮ Sufficient Conditions for Linear Stability of Complex-Balanced Equilibria in Generalized Mass-Action Systems ⋮ Families of toric chemical reaction networks ⋮ Sign conditions for the existence of at least one positive solution of a sparse polynomial system ⋮ Translated chemical reaction networks ⋮ Systems of polynomials with at least one positive real zero ⋮ Algebra and Geometry in the Study of Enzymatic Cascades ⋮ Regions of multistationarity in cascades of Goldbeter-Koshland loops ⋮ Analyzing multistationarity in chemical reaction networks using the determinant optimization method ⋮ The Inheritance of Nondegenerate Multistationarity in Chemical Reaction Networks ⋮ Network translation and steady-state properties of chemical reaction systems ⋮ Symbolic analysis of multiple steady states in a MAPK chemical reaction network ⋮ The multistationarity structure of networks with intermediates and a binomial core network ⋮ Multistationarity in the space of total concentrations for systems that admit a monomial parametrization ⋮ Characterizing injectivity of classes of maps via classes of matrices ⋮ Bistability of sequestration networks ⋮ Some Network Conditions for Positive Recurrence of Stochastically Modeled Reaction Networks ⋮ Efficiently and effectively recognizing toricity of steady state varieties ⋮ Some Results on Injectivity and Multistationarity in Chemical Reaction Networks ⋮ Sign-sensitivities for reaction networks: an algebraic approach ⋮ Complex-balanced equilibria of generalized mass-action systems: necessary conditions for linear stability ⋮ Newton polytopes and relative entropy optimization ⋮ On the Bijectivity of Families of Exponential/Generalized Polynomial Maps ⋮ Analysis of mass-action systems by split network translation ⋮ Oscillations and bistability in a model of ERK regulation ⋮ Lower bounds for positive roots and regions of multistationarity in chemical reaction networks ⋮ Multistability of Small Reaction Networks ⋮ Algebra, geometry and topology of ERK kinetics ⋮ Symbolic Proof of Bistability in Reaction Networks ⋮ MAPK's networks and their capacity for multistationarity due to toric steady states ⋮ Multistability of Reaction Networks with One-Dimensional Stoichiometric Subspaces ⋮ Which Small Reaction Networks Are Multistationary? ⋮ A global convergence result for processive multisite phosphorylation systems

Uses Software

• RAGlib
• SageMath
• QSopt_ex
• TOPCOM
• QSopt-Exact

Cites Work

• Unnamed Item
• Unnamed Item
• Unnamed Item
• Unnamed Item
• Unnamed Item
• Unnamed Item
• Unnamed Item
• Unnamed Item
• Unnamed Item
• Unnamed Item
• Logarithmically improved criteria for the 3D nematic liquid crystal flows in the Morrey-Campanato space
• Chemical reaction systems with toric steady states
• A Jacobian criterion for the simultaneous injectivity on positive variables of linearly parameterized polynomial maps
• Global injectivity and multiple equilibria in uni- and bi-molecular reaction networks
• Certifying feasibility and objective value of linear programs
• Multistationarity in mass action networks with applications to ERK activation
• Polyhedral and algebraic methods in computational geometry
• Signsolvability revisited
• Graph-theoretic criteria for injectivity and unique equilibria in general chemical reaction systems
• Sign patterns for chemical reaction networks
• Homotopy methods for counting reaction network equilibria
• A tutorial on geometric programming
• Recasting nonlinear differential equations as S-systems: a canonical nonlinear form
• Mathematical biology. Vol. 1: An introduction.
• The existence and uniqueness of steady states for a class of chemical reaction networks
• Multiple steady states for chemical reaction networks of deficiency one
• Concordant chemical reaction networks
• Concordant chemical reaction networks and the species-reaction graph
• Preclusion of switch behavior in networks with mass-action kinetics
• Multivariate Descartes' rule
• Graph-theoretic approaches to injectivity and multiple equilibria in systems of interacting elements
• Multistationarity in sequential distributed multisite phosphorylation networks
• Exact solutions to linear programming problems
• Multistationarity in the activation of a MAPK: parametrizing the relevant region in parameter space
• Discriminants, resultants, and multidimensional determinants
• The Jacobian matrix and global univalence of mappings
• Some Results on Injectivity and Multistationarity in Chemical Reaction Networks
• Power-Law Kinetics and Determinant Criteria for the Preclusion of Multistationarity in Networks of Interacting Species
• Generalized Mass-Action Systems and Positive Solutions of Polynomial Equations with Real and Symbolic Exponents (Invited Talk)
• Simplifying the Jacobian Criterion for Precluding Multistationarity in Chemical Reaction Networks
• Multiple Equilibria in Complex Chemical Reaction Networks: Semiopen Mass Action Systems
• Tackling Multiplicity of Equilibria with Gröbner Bases
• Determinant Expansions of Signed Matrices and of Certain Jacobians
• Lectures on Polytopes
• Descartes’ Rule of Signs for Polynomial Systems Supported on Circuits
• Oriented Matroids
• Generalized Mass Action Systems: Complex Balancing Equilibria and Sign Vectors of the Stoichiometric and Kinetic-Order Subspaces
• Some Geometrical Aspects of Control Points for Toric Patches
• Improving the accuracy of linear programming solvers with iterative refinement
• The Numerical Solution of Systems of Polynomials Arising in Engineering and Science
• Multiple Equilibria in Complex Chemical Reaction Networks: I. The Injectivity Property
• Switching in Mass Action Networks Based on Linear Inequalities
• PMatrix Properties, Injectivity, and Stability in Chemical Reaction Systems
• Multiple Equilibria in Complex Chemical Reaction Networks: II. The Species-Reaction Graph
• Existence and Uniqueness of Solutions for the Equations of Nonlinear DC Networks
• Algorithms in real algebraic geometry
• Cocircuit graphs and efficient orientation reconstruction in oriented matroids

This page was built for publication: Sign conditions for injectivity of generalized polynomial maps with applications to chemical reaction networks and real algebraic geometry